Detail information of GWHGAAEX012441/evm.TU.scaffold_43.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383763379|ref|YP_005442361.1| | 0 | formate--tetrahydrofolate ligase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| nr | gi|2507455|sp|P28723.3|FTHS_SPIOL | 0 | RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase [Spinacia oleracea] |
| Swissprot | tr|P28723|FTHS_SPIOL | 0 | Formate--tetrahydrofolate ligase |
| trEMBL | tr|C5X255|C5X255_SORBI | 0 | Putative uncharacterized protein Sb02g026140 {ECO:0000313|EMBL:EER96817.1} |
| TAIR | AT1G50480 | 0 | 10-formyltetrahydrofolate synthetase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 3202882 | 3221088 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012441
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01268.18 | FTHFS | 48 | 665 | 9.70E-255 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004329 | Molecular Function | formate-tetrahydrofolate ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.080 |
| SRR2545915 | Juvenile tuber | 34.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.090 |
| SRR5643514 | five period of Gastrodia elata | 72.920 | |
| SRR5643515 | five period of Gastrodia elata | 60.400 | |
| SRR5643524 | five period of Gastrodia elata | 58.030 | |
| SRR5643525 | five period of Gastrodia elata | 32.430 | |
| SRR5643528 | five period of Gastrodia elata | 34.340 | |
| SRR5643658 | five period of Gastrodia elata | 30.890 | |
| SRR5643659 | five period of Gastrodia elata | 30.980 | |
| SRR5643660 | five period of Gastrodia elata | 28.750 | |
| SRR5643661 | five period of Gastrodia elata | 29.020 | |
| SRR5643662 | five period of Gastrodia elata | 27.470 | |
| SRR5643663 | five period of Gastrodia elata | 31.000 | |
| SRR5643664 | five period of Gastrodia elata | 27.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 92.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 75.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 92.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 65.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 65.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 64.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 58.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 102.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 83.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 124.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 124.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.73 |
| Juven | Juvenile tuber | 48.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.24 | |
| Mother_Juven | Mother tuber of Juvenile | 24.19 |