Detail information of GWHGAAEX012442/evm.TU.scaffold_43.77


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG18125.00E-69Predicted E3 ubiquitin ligase
nrgi|703139870|ref|XP_010107082.1|2.32E-80putative E3 ubiquitin-protein ligase [Morus notabilis]
Swissprottr|Q9SKC3|ARI9_ARATH1.00E-15Probable E3 ubiquitin-protein ligase ARI9
trEMBLtr|W9RVX8|W9RVX8_9ROSA9.00E-81Putative E3 ubiquitin-protein ligase {ECO:0000313|EMBL:EXC13603.1}
TAIRAT3G536905.00E-69RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003933647693370014+
Transcript Sequence

Network for GWHGAAEX012442

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01485.20IBR2042504.70E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.340
SRR2545915Juvenile tuber0.190
SRP108465SRR5643513five period of Gastrodia elata1.400
SRR5643514five period of Gastrodia elata1.700
SRR5643515five period of Gastrodia elata1.140
SRR5643524five period of Gastrodia elata1.160
SRR5643525five period of Gastrodia elata0.620
SRR5643528five period of Gastrodia elata0.350
SRR5643658five period of Gastrodia elata0.890
SRR5643659five period of Gastrodia elata1.000
SRR5643660five period of Gastrodia elata0.310
SRR5643661five period of Gastrodia elata0.690
SRR5643662five period of Gastrodia elata0.160
SRR5643663five period of Gastrodia elata0.280
SRR5643664five period of Gastrodia elata0.190
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.810
SRR6049655Rhizomagastrodiae_C368-T10_good_11.510
SRR6049656Rhizomagastrodiae_C368-T07_good_11.710
SRR6049657Rhizomagastrodiae_C368-T07_good_11.260
SRR6049658Rhizomagastrodiae_C368-T04_good_10.150
SRR6049659Rhizomagastrodiae_C368-T04_good_10.290
SRR6049660Rhizomagastrodiae_C368-T01_good_10.900
SRR6049661Rhizomagastrodiae_C368-T04_good_11.100
SRR6049662Rhizomagastrodiae_C368-T01_good_12.320
SRR6049663Rhizomagastrodiae_C368-T01_good_10.580
SRR6049664Rhizomagastrodiae_C368-T10_good_12.020
SRR6049665Rhizomagastrodiae_C368-T10_good_12.020
SRP279888GastroGastrodia elata tuber 0.21
JuvenJuvenile tuber0.56
Mother_GastroMother tuber of Gastrodia elata 0.49
Mother_JuvenMother tuber of Juvenile 0.13