Detail information of GWHGAAEX012447/evm.TU.scaffold_43.83


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-15FOG: Predicted E3 ubiquitin ligase
nrgi|672136451|ref|XP_008791925.1|2.66E-32PREDICTED: immediate early response gene 5-like protein [Phoenix dactylifera]
Swissprottr|P0CH30|RING1_GOSHI5.00E-14E3 ubiquitin-protein ligase RING1
trEMBLtr|I1I7P8|I1I7P8_BRADI2.00E-23Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G37800.1}
TAIRAT3G600803.00E-15RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003935501873562421-
Transcript Sequence

Network for GWHGAAEX012447

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21201613.90E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.370
SRR2545915Juvenile tuber5.820
SRP108465SRR5643513five period of Gastrodia elata9.910
SRR5643514five period of Gastrodia elata8.150
SRR5643515five period of Gastrodia elata11.750
SRR5643524five period of Gastrodia elata8.560
SRR5643525five period of Gastrodia elata10.990
SRR5643528five period of Gastrodia elata9.810
SRR5643658five period of Gastrodia elata12.450
SRR5643659five period of Gastrodia elata17.260
SRR5643660five period of Gastrodia elata14.310
SRR5643661five period of Gastrodia elata17.400
SRR5643662five period of Gastrodia elata11.980
SRR5643663five period of Gastrodia elata11.700
SRR5643664five period of Gastrodia elata14.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.920
SRR6049655Rhizomagastrodiae_C368-T10_good_19.520
SRR6049656Rhizomagastrodiae_C368-T07_good_17.710
SRR6049657Rhizomagastrodiae_C368-T07_good_15.610
SRR6049658Rhizomagastrodiae_C368-T04_good_16.090
SRR6049659Rhizomagastrodiae_C368-T04_good_14.710
SRR6049660Rhizomagastrodiae_C368-T01_good_17.120
SRR6049661Rhizomagastrodiae_C368-T04_good_16.070
SRR6049662Rhizomagastrodiae_C368-T01_good_18.610
SRR6049663Rhizomagastrodiae_C368-T01_good_19.510
SRR6049664Rhizomagastrodiae_C368-T10_good_16.830
SRR6049665Rhizomagastrodiae_C368-T10_good_16.830
SRP279888GastroGastrodia elata tuber 6.81
JuvenJuvenile tuber9.11
Mother_GastroMother tuber of Gastrodia elata 6.25
Mother_JuvenMother tuber of Juvenile 6.50