Detail information of GWHGAAEX012450/evm.TU.scaffold_43.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672122046|ref|XP_008784343.1| | 0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 7.00E-114 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|W5ELL7|W5ELL7_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_4DL_C77385A0D.2} |
| TAIR | AT4G38180 | 2.00E-113 | FAR1-related sequence 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 3661181 | 3678819 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012450
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00320.26 | GATA | 39 | 75 | 2.70E-13 |
| PF03101.14 | FAR1 | 109 | 195 | 8.00E-25 |
| PF10551.8 | MULE | 315 | 408 | 1.10E-20 |
| PF04434.16 | SWIM | 594 | 628 | 8.30E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.740 |
| SRR2545915 | Juvenile tuber | 15.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.990 |
| SRR5643514 | five period of Gastrodia elata | 17.800 | |
| SRR5643515 | five period of Gastrodia elata | 16.950 | |
| SRR5643524 | five period of Gastrodia elata | 16.900 | |
| SRR5643525 | five period of Gastrodia elata | 23.730 | |
| SRR5643528 | five period of Gastrodia elata | 22.080 | |
| SRR5643658 | five period of Gastrodia elata | 26.140 | |
| SRR5643659 | five period of Gastrodia elata | 18.730 | |
| SRR5643660 | five period of Gastrodia elata | 21.820 | |
| SRR5643661 | five period of Gastrodia elata | 17.860 | |
| SRR5643662 | five period of Gastrodia elata | 16.900 | |
| SRR5643663 | five period of Gastrodia elata | 16.920 | |
| SRR5643664 | five period of Gastrodia elata | 19.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.38 |
| Juven | Juvenile tuber | 15.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.28 | |
| Mother_Juven | Mother tuber of Juvenile | 10.82 |