Detail information of GWHGAAEX012459/evm.TU.scaffold_43.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|257094183|ref|YP_003167824.1|7.00E-33WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
KOGKOG06430Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1)
nrgi|743841231|ref|XP_010937470.1|0PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Elaeis guineensis]
Swissprottr|Q38884|EIF3I_ARATH0Eukaryotic translation initiation factor 3 subunit I {ECO:0000255|HAMAP-Rule:MF_03008}
trEMBLtr|M0S5Z8|M0S5Z8_MUSAM0Eukaryotic translation initiation factor 3 subunit I {ECO:0000256|HAMAP-Rule:MF_03008}
TAIRAT2G462900Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003938611933871109-
Transcript Sequence

Network for GWHGAAEX012459

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD4043804.40E-09
PF00400.31WD401882190.00012
PF00400.31WD402833147.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K03246EIF3I RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0005515Molecular Functionprotein binding
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms87.940
SRR2545915Juvenile tuber105.860
SRP108465SRR5643513five period of Gastrodia elata126.650
SRR5643514five period of Gastrodia elata111.540
SRR5643515five period of Gastrodia elata117.640
SRR5643524five period of Gastrodia elata121.890
SRR5643525five period of Gastrodia elata61.910
SRR5643528five period of Gastrodia elata71.320
SRR5643658five period of Gastrodia elata59.070
SRR5643659five period of Gastrodia elata138.080
SRR5643660five period of Gastrodia elata138.410
SRR5643661five period of Gastrodia elata111.530
SRR5643662five period of Gastrodia elata133.560
SRR5643663five period of Gastrodia elata111.090
SRR5643664five period of Gastrodia elata102.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1111.330
SRR6049655Rhizomagastrodiae_C368-T10_good_184.840
SRR6049656Rhizomagastrodiae_C368-T07_good_1145.710
SRR6049657Rhizomagastrodiae_C368-T07_good_199.240
SRR6049658Rhizomagastrodiae_C368-T04_good_1121.880
SRR6049659Rhizomagastrodiae_C368-T04_good_1109.590
SRR6049660Rhizomagastrodiae_C368-T01_good_1122.590
SRR6049661Rhizomagastrodiae_C368-T04_good_1119.510
SRR6049662Rhizomagastrodiae_C368-T01_good_1175.720
SRR6049663Rhizomagastrodiae_C368-T01_good_1160.960
SRR6049664Rhizomagastrodiae_C368-T10_good_1152.910
SRR6049665Rhizomagastrodiae_C368-T10_good_1152.910
SRP279888GastroGastrodia elata tuber 163.18
JuvenJuvenile tuber132.90
Mother_GastroMother tuber of Gastrodia elata 108.36
Mother_JuvenMother tuber of Juvenile 96.84