Gene detail

Detail information of GWHGAAEX012464/evm.TU.scaffold_43.114

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262198376\|ref\|YP_003269585.1\|	6.00E-61	trehalose-phosphatase [Haliangium ochraceum DSM 14365]
KOG	KOG1050	2.00E-130	Trehalose-6-phosphate synthase component TPS1 and related subunits
nr	gi\|672176204\|ref\|XP_008808174.1\|	6.36E-146	PREDICTED: probable trehalose-phosphate phosphatase 6 [Phoenix dactylifera]
Swissprot	tr\|Q6ZAL2\|TPP6_ORYSJ	3.00E-143	Probable trehalose-phosphate phosphatase 6
trEMBL	tr\|M0U9H0\|M0U9H0_MUSAM	4.00E-143	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}
TAIR	AT5G65140	2.00E-130	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000039	4965169	4970125	-

Transcript Sequence
>GWHTAAEX012464 ATCCCAGCTTGCTGCCTTAACTTCTCACAGCCATGACGAACAATTGTGTCTTCCAGGCCGAAGAGAAGCTCGCCCCCGCCCAATCACGGAGCTACCCACCACCACGCCGCGGCGCCTGCAAGAGGAGCGCGGCGGCCCATCTCAAAATCAATGCCATGATTTCCTCCTCATTGCTGGAATCCATGAAAGCATCTTCTCCTACTGACCCAAGACCCAAGCCAACCTCGGAAACCGCCGTCAGCGATTGGAACAAAAGACATCCATCTGCGCTGAAGGTGTTCGACGAAATAACTGCTGCGGCGAAGGGGAAGAAGATAGTGATGTTTCTGGATTACGACGGCACTTTGTCTCCCATAGTTGACGACCCAGACTCAGCGTTCATGTCCGATGCGATGAGGGAGACCGTGAGGTGTGTGGCCAAGCATTTTCCGACTGCTATTGTCAGCGGGCGGTGCAGAGACAAGATATTTGGCTTTGTGCAATTGGCGGAGCTGTACTATGCAGGAAGCCATGGCATGGATATCAAAGGACCTACACAGTGCCCTAACCATGCTAATGTTCAGCCTAAAACAGTGCTCTGCCAGCCAGCCACTGCCTTTATATCTACGATCAATCAAGTTTACAATGTGCTTTTGGAGAAAACGAGGATGATTCCTGGCGCTAAAGTGGAGAACAACAGATTCTGCCTATCAGTTCACTTTCGCTGTGTCGAAGAAAAGAGTTGGATTTGTCTTGCTGAGGAGGTTCGATCAGCTCTAGCGTCATATTCAGATTTAAAATTAACGCTGGGAAGAAAGGTGTTGGAAATTCGGCCAGCTATTGAATGGGACAAAGGCAAGGCCCTGGAGTTCCTGTTGGAAGAGCTCGGATTTGCCGACCGCACTGATATCTTGCCGGTGTATATTGGCGACGACCGTACCGATGAGGATGCCTTCAAAGCTCTCCGCTGTCGAGGGCAGGGGTTTGGCATTTTGGTTTCCAAATTTCCCAAGGAGACTTTCGCCAACTACTCACTCAAAGAGCCTTCGGAGTGTATTCCTCTCGCATCACACAACATTGCTAGTTCCCATATTTCTTACAATTCACTTTACCACAGCTCAAAATCTTACTTCAATGTAGGCCATCTCTCACAGGTATTGGCCATTTTATATATATTATTTTAGCAATGCTATTAGGCTACATGCCATTCAAATTATCAACAAAAAAAATGCAGAATAATAAAGGTAAAGAACATACTTATACTATCAATCACTTGCAAAATATGATATTACGACCATACTCTCAATATTCACACTGTATCACAATGTCACAATAACAGATTATGCAAAATAATACAATATGTTATATTTTATGTAGCTATTGCATTCCACCATTACAACAATAATCCGTCAATTAGATTGTCTTAAGCACACATCAGAATCATTTGATTTTAGCAGTGTGACAACAAGATTTGGGAAAATATAAAGAGGTTCTTCTATGGAGAGGGTATTTATAGC

Network for GWHGAAEX012464

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02358.15	Trehalose_PPase	98	332	1.70E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01087	otsB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.710
SRP064423	SRR2545915	Juvenile tuber	15.150
SRP108465	SRR5643513	five period of Gastrodia elata	3.680
	SRR5643514	five period of Gastrodia elata	2.260
	SRR5643515	five period of Gastrodia elata	4.770
	SRR5643524	five period of Gastrodia elata	2.920
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	16.010
	SRR5643660	five period of Gastrodia elata	16.690
	SRR5643661	five period of Gastrodia elata	12.020
	SRR5643662	five period of Gastrodia elata	2.640
	SRR5643663	five period of Gastrodia elata	1.270
	SRR5643664	five period of Gastrodia elata	1.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.430
SRP279888	Gastro	Gastrodia elata tuber	1.95
	Juven	Juvenile tuber	1.25
	Mother_Gastro	Mother tuber of Gastrodia elata	0.36
	Mother_Juven	Mother tuber of Juvenile	0.16