Detail information of GWHGAAEX012466/evm.TU.scaffold_43.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 4.00E-21 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|115445577|ref|NP_001046568.1| | 0 | Os02g0283800 [Oryza sativa Japonica Group] |
| Swissprot | tr|C0LGT1|Y5129_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At5g10290 (Precursor) |
| trEMBL | tr|Q6K4T4|Q6K4T4_ORYSJ | 0 | Putative SERK2 protein {ECO:0000313|EMBL:BAD22198.1} |
| TAIR | AT5G10290 | 0 | leucine-rich repeat transmembrane protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 5335943 | 5377519 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012466
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 42 | 81 | 2.70E-09 |
| PF00069.24 | Pkinase | 305 | 576 | 4.70E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-II |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.110 |
| SRR2545915 | Juvenile tuber | 25.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.910 |
| SRR5643514 | five period of Gastrodia elata | 14.590 | |
| SRR5643515 | five period of Gastrodia elata | 13.560 | |
| SRR5643524 | five period of Gastrodia elata | 13.820 | |
| SRR5643525 | five period of Gastrodia elata | 10.970 | |
| SRR5643528 | five period of Gastrodia elata | 7.910 | |
| SRR5643658 | five period of Gastrodia elata | 9.310 | |
| SRR5643659 | five period of Gastrodia elata | 15.180 | |
| SRR5643660 | five period of Gastrodia elata | 17.940 | |
| SRR5643661 | five period of Gastrodia elata | 14.680 | |
| SRR5643662 | five period of Gastrodia elata | 13.860 | |
| SRR5643663 | five period of Gastrodia elata | 16.230 | |
| SRR5643664 | five period of Gastrodia elata | 15.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.37 |
| Juven | Juvenile tuber | 18.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.60 | |
| Mother_Juven | Mother tuber of Juvenile | 7.16 |