Gene detail

Detail information of GWHGAAEX012468/evm.TU.scaffold_43.128

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332290735\|ref\|YP_004429344.1\|	1.00E-26	leucine-rich repeat-containing protein [Krokinobacter sp. 4H-3-7-5]
nr	gi\|672121000\|ref\|XP_008783789.1\|	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Phoenix dactylifera]
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	7.00E-137	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|A0A061E895\|A0A061E895_THECC	0	Leucine-rich repeat protein kinase family protein {ECO:0000313\|EMBL:EOY00878.1}
TAIR	AT1G67510	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000039	5418104	5430546	-

Transcript Sequence
>GWHTAAEX012468 AACGAACTGCACTTCGTCGCAGATAACAAAGAGCGGAGCAATTCCCTGTTATAACGTAGATGCTCCGCCTTTCCTCGCCGCCCTTCCGAACTCCATTCTTTGAAGCCATAGCGATCGCAGCTCTGCTCTGCCATGCAATTCATCCCTCCCCAATATCCGCACTGTCGACTGACGGTCTCTCCCTTTTGGCCTTCAAATCGGCGATCTCGTCGGATCCATCCTCTGCCCTCGCCTCGTGGTCTAAGAGCGACGCTGATCCTTGCCGCTGGCCAGGCGTCTTCTGCGCGAACCTCTCCTCCACCCCCAGCCCCAACCGAGTTGTCGCCATCGCAGTCTCCAGCAAGAATCTCTCCGGCTACATCCCATCGGAGCTCGGATCGCTCGCCTGCCTCCGCCGCCTCAACCTCCACGGCAACCGCCTCTCCGGCGTCATCCCCTCCCAGCTCTTCGGCGCTGCCTCCCTCCACTCCCTCTTCCTCTACGGAAACAATCTCTCCGGCCCCATTCCCCCCTCCGTCTGTGACCCCCCGCGGCTGCAGAACCTTGATCTTTCCGACAACTCCCTCTCCGGCAATCTTCCGCCCGAGATGCGCGAGTGCCGCCAGCTCCAGCGCCTCTTTCTGGCGGGAAACATGTTGTCTGGAGGCATCCCGGCCGGGATCTGGTCCCAGATGGTCGGCCTCGTCCAGCTCGACATTTCGTCGAATCGCTTCGAGGGGCCTTTGCCTCCCGACATCGGCGATCTGGATTCCTTAACCGGCGCGCTCAATCTCTCACGCAACCGCTTCTCTGGCTCGATTCCCAAATCCCTAGGTGGCATTTCTTCTGCGGTGAGCCTGGATCTAAGACACAACAATTTCTCCGGGGAGATCCCGCAGAGCGGATCTCTGATGGGCCGGAGCCCCGCAACATTTGCCGATAATCCGGGCCTCTGCGGATTCCCGCTACAAATCCCCTGTTCTGGCGCTCTTCAGGGGGGCGAGGAAGCCACTACAGAGACGGAGTTATGGCAGGACGGCAGGAAGGGGCTGCGGCCAGGATTTATTTTAATGATCTCGGTGGCAAACGCCGCTGGAGTGGCTGTCATAGGTTTGGCTCTGGTTTACGTTTACTGGAAGGTCAGGAAGAGAATGAGGGAGAAGGGGAGGCTTGGTGTGAAATGGGGGATCTGCTTGAGAAGAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATCCTCGGTAAGGGGGGAAGGGAGGCTGGTGTGGATGGGCAAGGGATTGGAGTTCGAGCTGGACGAACTGCTCCGGGCTTCGGCTTATGTGTTGGGAAAGGGAAGGATGGGGATCGTGTACAAGGTTGTGCTAGGAAACGGAGTGCCAATGGCGGTGCGGCGGCTCGGAGGGGAAGGTGGAGGGCAGCATTACAAGGAGTTCGTCGCAGAGGTTCAGGCGATTGCCAAGGTTAAGCACCGGAACGTCGTGAGGCTTCGGGCGTACTATTGGGCCCAGGACGAGAAGCTTCTCGTTTCGAATTTCATTTCCAATGGCAACCTCACCGCTGCTCTTCGAGGAAAATCTGGTGAAGGGAGGCTGCCTTGGTCAATTCGGCTCCATATCGCAAAGGGCGCGGCTCGTGGGCTAGCTCACATACATGATTGCAGCCCTAGGAAATTGGTCCATGGAGACATAAAGCCGTCTAACATCCTTTTAGACGCGGAACACAACCCCTTCATCTCCGATTTCGGCCTCGCCCACCTCTTCACCATCACCTCAACAACCAATGAAACCACATCATTGCCAAGCGGTAGCCGTGGTTTCATCAGCGCTGGACCTCCATTTGCCCCCCCAACCCAAAAGGGGGACGTCTACGCCTTCGGCATCGTTCTCCTCGAGCTTCTCTCCGCCTCTTCTGCGGGTGAGAATGAGTTGCTGAAGTGGGTGCAGCAGGCTCGCCCGTTTCCGGAGTTAGTAGACCCCGTGTTACTGCAAGAGGCTCATGCGAAGAAGGAAGCAACGACTGCTTTCCACCTGGCGCTCGCTTGCACCGACCCCGAGCCTGACGTCCGACCAACGATGAAGGCCGTCTCCGACAGACTTGATCGTATTGGACGATGATATTTTTCGGGAGCGTTGCTCTGCAATAA

Network for GWHGAAEX012468

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	36	75	3.70E-12
PF13855.5	LRR_8	111	169	7.80E-08
PF00069.24	Pkinase	419	673	9.00E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005515	Molecular Function	protein binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.390
SRP064423	SRR2545915	Juvenile tuber	3.370
SRP108465	SRR5643513	five period of Gastrodia elata	27.280
	SRR5643514	five period of Gastrodia elata	14.240
	SRR5643515	five period of Gastrodia elata	16.540
	SRR5643524	five period of Gastrodia elata	15.740
	SRR5643525	five period of Gastrodia elata	1.090
	SRR5643528	five period of Gastrodia elata	0.520
	SRR5643658	five period of Gastrodia elata	1.390
	SRR5643659	five period of Gastrodia elata	4.760
	SRR5643660	five period of Gastrodia elata	2.050
	SRR5643661	five period of Gastrodia elata	4.880
	SRR5643662	five period of Gastrodia elata	1.270
	SRR5643663	five period of Gastrodia elata	2.520
	SRR5643664	five period of Gastrodia elata	0.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.150
SRP279888	Gastro	Gastrodia elata tuber	0.89
	Juven	Juvenile tuber	1.45
	Mother_Gastro	Mother tuber of Gastrodia elata	3.00
	Mother_Juven	Mother tuber of Juvenile	1.46