Detail information of GWHGAAEX012469/evm.TU.scaffold_43.130
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|53803406|ref|YP_114786.1| | 2.00E-09 | 50S ribosomal protein L23 [Methylococcus capsulatus str. Bath] |
| KOG | KOG4089 | 4.00E-54 | Predicted mitochondrial ribosomal protein L23 |
| nr | gi|743773096|ref|XP_010916879.1| | 7.84E-76 | PREDICTED: uncharacterized protein LOC105041617 [Elaeis guineensis] |
| trEMBL | tr|M0RJI5|M0RJI5_MUSAM | 8.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19100_001} |
| TAIR | AT4G39880 | 4.00E-54 | Ribosomal protein L23/L15e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 5491195 | 5492212 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012469
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00276.19 | Ribosomal_L23 | 31 | 90 | 1.50E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02892 | RP-L23, MRPL23, rplW | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.660 |
| SRR2545915 | Juvenile tuber | 18.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.720 |
| SRR5643514 | five period of Gastrodia elata | 37.130 | |
| SRR5643515 | five period of Gastrodia elata | 35.830 | |
| SRR5643524 | five period of Gastrodia elata | 35.460 | |
| SRR5643525 | five period of Gastrodia elata | 46.170 | |
| SRR5643528 | five period of Gastrodia elata | 40.220 | |
| SRR5643658 | five period of Gastrodia elata | 41.430 | |
| SRR5643659 | five period of Gastrodia elata | 52.320 | |
| SRR5643660 | five period of Gastrodia elata | 51.100 | |
| SRR5643661 | five period of Gastrodia elata | 56.890 | |
| SRR5643662 | five period of Gastrodia elata | 48.720 | |
| SRR5643663 | five period of Gastrodia elata | 48.320 | |
| SRR5643664 | five period of Gastrodia elata | 40.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.04 |
| Juven | Juvenile tuber | 25.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.81 | |
| Mother_Juven | Mother tuber of Juvenile | 19.32 |