Detail information of GWHGAAEX012472/evm.TU.scaffold_43.134


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|83310318|ref|YP_420582.1|03-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Magnetospirillum magneticum AMB-1]
nrgi|695043194|ref|XP_009409281.1|0PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|P27608|AROF_TOBAC0Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor)
trEMBLtr|Q30D02|Q30D02_FAGSY0Putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 {ECO:0000313|EMBL:ABA54865.1}
TAIRAT1G224100Class-II DAHP synthetase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003956281705633874+
Transcript Sequence

Network for GWHGAAEX012472

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01474.15DAHP_synth_2895252.90E-194
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01626E2.5.1.54, aroF, aroG, aroH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0009073Biological Processaromatic amino acid family biosynthetic process
GO:0003849Molecular Function3-deoxy-7-phosphoheptulonate synthase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms90.150
SRR2545915Juvenile tuber95.520
SRP108465SRR5643513five period of Gastrodia elata265.490
SRR5643514five period of Gastrodia elata133.750
SRR5643515five period of Gastrodia elata526.520
SRR5643524five period of Gastrodia elata270.630
SRR5643525five period of Gastrodia elata312.650
SRR5643528five period of Gastrodia elata846.300
SRR5643658five period of Gastrodia elata567.520
SRR5643659five period of Gastrodia elata257.190
SRR5643660five period of Gastrodia elata191.030
SRR5643661five period of Gastrodia elata316.270
SRR5643662five period of Gastrodia elata517.360
SRR5643663five period of Gastrodia elata349.550
SRR5643664five period of Gastrodia elata141.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_152.510
SRR6049655Rhizomagastrodiae_C368-T10_good_154.880
SRR6049656Rhizomagastrodiae_C368-T07_good_153.790
SRR6049657Rhizomagastrodiae_C368-T07_good_147.250
SRR6049658Rhizomagastrodiae_C368-T04_good_149.510
SRR6049659Rhizomagastrodiae_C368-T04_good_167.840
SRR6049660Rhizomagastrodiae_C368-T01_good_189.670
SRR6049661Rhizomagastrodiae_C368-T04_good_162.610
SRR6049662Rhizomagastrodiae_C368-T01_good_1161.460
SRR6049663Rhizomagastrodiae_C368-T01_good_1146.400
SRR6049664Rhizomagastrodiae_C368-T10_good_161.750
SRR6049665Rhizomagastrodiae_C368-T10_good_161.750
SRP279888GastroGastrodia elata tuber 235.52
JuvenJuvenile tuber90.65
Mother_GastroMother tuber of Gastrodia elata 883.92
Mother_JuvenMother tuber of Juvenile 1,055.10