Detail information of GWHGAAEX012473/evm.TU.scaffold_43.135


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|194334049|ref|YP_002015909.1|7.00E-13RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
KOGKOG42096.00E-119Splicing factor RNPS1, SR protein superfamily
nrgi|595829341|ref|XP_007205858.1|2.88E-131hypothetical protein PRUPE_ppa011157mg [Prunus persica]
Swissprottr|Q9LX90|PABN3_ARATH2.00E-119Polyadenylate-binding protein 3 {ECO:0000303|PubMed:18479511}
trEMBLtr|M5W001|M5W001_PRUPE1.00E-131Uncharacterized protein {ECO:0000313|EMBL:EMJ07057.1}
TAIRAT5G103506.00E-119RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003956340475684169-
Transcript Sequence

Network for GWHGAAEX012473

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11001682.50E-17
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K14396PABPN1, PABP2 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.920
SRR2545915Juvenile tuber3.920
SRP108465SRR5643513five period of Gastrodia elata7.200
SRR5643514five period of Gastrodia elata10.100
SRR5643515five period of Gastrodia elata6.620
SRR5643524five period of Gastrodia elata8.300
SRR5643525five period of Gastrodia elata3.290
SRR5643528five period of Gastrodia elata4.110
SRR5643658five period of Gastrodia elata3.730
SRR5643659five period of Gastrodia elata5.190
SRR5643660five period of Gastrodia elata5.260
SRR5643661five period of Gastrodia elata6.430
SRR5643662five period of Gastrodia elata6.350
SRR5643663five period of Gastrodia elata6.920
SRR5643664five period of Gastrodia elata5.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.040
SRR6049655Rhizomagastrodiae_C368-T10_good_13.790
SRR6049656Rhizomagastrodiae_C368-T07_good_14.580
SRR6049657Rhizomagastrodiae_C368-T07_good_14.420
SRR6049658Rhizomagastrodiae_C368-T04_good_12.470
SRR6049659Rhizomagastrodiae_C368-T04_good_11.220
SRR6049660Rhizomagastrodiae_C368-T01_good_14.590
SRR6049661Rhizomagastrodiae_C368-T04_good_13.420
SRR6049662Rhizomagastrodiae_C368-T01_good_18.460
SRR6049663Rhizomagastrodiae_C368-T01_good_14.420
SRR6049664Rhizomagastrodiae_C368-T10_good_15.810
SRR6049665Rhizomagastrodiae_C368-T10_good_15.810
SRP279888GastroGastrodia elata tuber 6.55
JuvenJuvenile tuber8.92
Mother_GastroMother tuber of Gastrodia elata 3.66
Mother_JuvenMother tuber of Juvenile 6.16