Detail information of GWHGAAEX012474/evm.TU.scaffold_43.136
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|340786973|ref|YP_004752438.1| | 7.00E-21 | hypothetical protein CFU_1783 [Collimonas fungivorans Ter331] |
| KOG | KOG2130 | 0 | Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain |
| nr | gi|743773898|ref|XP_010917304.1| | 0 | PREDICTED: F-box protein At1g78280 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9M9E8|FB92_ARATH | 0 | F-box protein At1g78280 |
| trEMBL | tr|M0S1V8|M0S1V8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21500_001} |
| TAIR | AT1G78280 | 0 | transferases, transferring glycosyl groups |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000039 | 5898743 | 5963430 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012474
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12937.6 | F-box-like | 20 | 64 | 1.00E-07 |
| PF13621.5 | Cupin_8 | 143 | 364 | 1.40E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 65.540 |
| SRR2545915 | Juvenile tuber | 58.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.860 |
| SRR5643514 | five period of Gastrodia elata | 27.170 | |
| SRR5643515 | five period of Gastrodia elata | 26.440 | |
| SRR5643524 | five period of Gastrodia elata | 27.880 | |
| SRR5643525 | five period of Gastrodia elata | 31.370 | |
| SRR5643528 | five period of Gastrodia elata | 42.140 | |
| SRR5643658 | five period of Gastrodia elata | 34.540 | |
| SRR5643659 | five period of Gastrodia elata | 20.060 | |
| SRR5643660 | five period of Gastrodia elata | 22.890 | |
| SRR5643661 | five period of Gastrodia elata | 20.830 | |
| SRR5643662 | five period of Gastrodia elata | 22.460 | |
| SRR5643663 | five period of Gastrodia elata | 24.980 | |
| SRR5643664 | five period of Gastrodia elata | 21.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 54.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 67.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 96.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 115.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 69.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 80.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 45.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 60.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.26 |
| Juven | Juvenile tuber | 54.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 52.67 | |
| Mother_Juven | Mother tuber of Juvenile | 76.92 |