Detail information of GWHGAAEX012475/evm.TU.scaffold_44.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG12990Vacuolar sorting protein VPS45/Stt10 (Sec1 family)
nrgi|672123167|ref|XP_008784936.1|0PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Phoenix dactylifera]
Swissprottr|O49048|VPS45_ARATH0Vacuolar protein sorting-associated protein 45 homolog
trEMBLtr|M0RJZ3|M0RJZ3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P20680_001}
TAIRAT1G771400vacuolar protein sorting 45

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004596790130003+
Transcript Sequence

Network for GWHGAAEX012475

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00995.22Sec1225513.30E-123
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12479VPS45 Endocytosis map04144
Autophagy - yeastmap04138

Gene Ontology

GO term OntologyName
GO:0006904Biological Processvesicle docking involved in exocytosis
GO:0016192Biological Processvesicle-mediated transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.660
SRR2545915Juvenile tuber18.810
SRP108465SRR5643513five period of Gastrodia elata13.660
SRR5643514five period of Gastrodia elata13.120
SRR5643515five period of Gastrodia elata13.730
SRR5643524five period of Gastrodia elata14.070
SRR5643525five period of Gastrodia elata12.250
SRR5643528five period of Gastrodia elata15.420
SRR5643658five period of Gastrodia elata16.170
SRR5643659five period of Gastrodia elata10.420
SRR5643660five period of Gastrodia elata10.830
SRR5643661five period of Gastrodia elata10.580
SRR5643662five period of Gastrodia elata10.230
SRR5643663five period of Gastrodia elata10.290
SRR5643664five period of Gastrodia elata10.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.230
SRR6049655Rhizomagastrodiae_C368-T10_good_116.440
SRR6049656Rhizomagastrodiae_C368-T07_good_112.020
SRR6049657Rhizomagastrodiae_C368-T07_good_110.840
SRR6049658Rhizomagastrodiae_C368-T04_good_111.090
SRR6049659Rhizomagastrodiae_C368-T04_good_111.430
SRR6049660Rhizomagastrodiae_C368-T01_good_112.570
SRR6049661Rhizomagastrodiae_C368-T04_good_111.510
SRR6049662Rhizomagastrodiae_C368-T01_good_115.390
SRR6049663Rhizomagastrodiae_C368-T01_good_113.470
SRR6049664Rhizomagastrodiae_C368-T10_good_114.350
SRR6049665Rhizomagastrodiae_C368-T10_good_114.350
SRP279888GastroGastrodia elata tuber 12.43
JuvenJuvenile tuber15.29
Mother_GastroMother tuber of Gastrodia elata 26.55
Mother_JuvenMother tuber of Juvenile 21.15