Gene detail

Detail information of GWHGAAEX012480/evm.TU.scaffold_44.7

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0239	Kinesin (KAR3 subfamily)
nr	gi\|672175413\|ref\|XP_008807759.1\|	PREDICTED: kinesin-4-like [Phoenix dactylifera]
Swissprot	tr\|O81635\|ATK4_ARATH	Kinesin-4
trEMBL	tr\|K4A5A1\|K4A5A1_SETIT	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR	AT5G27000	kinesin 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	220954	231698	-

Transcript Sequence
>GWHTAAEX012480 ATGGCAGCGGCTAGAAGGCATGAAGCAGCAGGCTGGCTTAGAAAAATAGTGGGGTCTGCAGGGGCTAATGATTTGCCTGAGAAGCCTACAGAAGAAGAATTCAGGCTAGGTCTGAGAAGCGGTTTTATCTTATGTACTGCACTCAACAAGGTTCACCCTGGGGCAGTAACAAAGGTTGTTGTAAGCTCAACCGATTCTATGGTAAGCTCAGATGCAGCCGCCTTGTCTGCTTATCAGTACTTTGAAAATGTAAGGAATTTCTTTGTAGCTGTTGAAGAGATTGGTCTCCCCACATTTGATACATCAGATTTTGAGCAGGGTGGTCAAACCTCAAGGATTGTAAACTGCATTTTGGCTCTTAAATCGCACAGCGAGGGGAAAAAAACAGGTGGGATTTCCTCATGGAAATTCGGGGCTACTGTTAAGGCTGCCGTCTCAGGAAACGCATTTTTGAGGAAAAACTCAAATTCTTTCTGGAATTCCTCTGCAAGGACTCGGTCCCAGATTGGAGGAGACAGTTACAATACTGAAAAAAAATCAAAATTTGAATCCCAAGAAATGACTTCATGTAGCAGTCTTGTTCGTGCACTTTTGTCAGACAAGAAACCAGAAGAAGTTCCAACACTTGTAGAGTCGCTGCTGAACAAAGTTGTGGAGGAGTTCGAGTGCCGCATTGCAAGACAAAATGAGGTGAAATTTGTTTCAAGCAAACCATTCTCAAAACATAAAGTTTTAATAAGCCCAGAAACTGCTGTTACTTTTGAGATGAATGAAAATATAGAAGATACCATGTGCACAATATCAAAAGAAGAGAGCTTCCACAATAATCATAAAAATGCAGAGGGATCCAAATATAAACTTTTAAAACAATGCTTGATTATTGATCAACAACAAAGACATATTCAGGAACTAAGATGCAATATTCAAACTACCAGAGCTTGTATGGAAGTCATGCAAAGAAAATGCTCTGAAGAGATGAAAATAATTGGGAAGTATGTAAGCAATCTGGCTAATATTTCTTCAAGCTATCATGAAGTTCTTGAAGAGAATAGAAAGCTGTACAACGAGGTGCAGGATCTTAAAGGAAGCATACGAGTTTACTGCAGAGTGAGGCCAAGCATCACCAGTAAATTTAGCAACGACACTATTGGATGTTTTGACGAGAGAAATATTACGATCAATGCTCCTTCAAAATATGGCAAAGATTGCAGAAAGACTTTTACCTTTAATAAGGTATTTGGTCCTTCAGCTTCACAAGAGGAGATCTTTGCAGATACCAAACCATTAATTCGATCTGTTCTTGATGGTTACAATGTCTGTATATTTGCCTATGGCCAAACAGGCTCTGGTAAAACTTATACAATGACTGGACCTCACAAATTCAACCAGCACAACATGGGAGTTAATTTTAGGGCATTGGAGGATCTGTTCAACCTCGCAGAACAAAGAAGAGGCATGTTTGCATATAAAATTTCTGTACAGATGATCGAAATATATAACGAGCAAGTGCGAGATCTCCTTGTGAGCGATGGTTCTAACAAAAGAGTAGGCATAAGAAACAGTTTTCAAAATAAAGTGAATGTACCAGATGCAAACCTGTTTCCAGTTTCTTCAACTGCTGATGTGATTGAACTCATGAATATTGGGCAAAGGAATCGTACGGTGGGTGCAACGACATTGAATGATCGAAGTAGTCGTTCTCACAGCTGCCTGACTATTCATGTTCAAGGAAAGAACTTGACATCGAAAAACATTCTTCATGGATGCATGCATCTGGTAGATCTGGCCGGCAGTGAAAGGGTTGATAAGTCTGAGGCTTTAGGAGAAAGGCTAAGAGAAGCACAACATATAAATAAATCTCTCTCAGCCTTGGGAGATGTGATATCTGCACTTGCACATAAAAGCTCGCATATTCCTTACAGAAATAGCAAACTCACTCAATTGCTACAGGACTCTCTTGGAGGGCAGGCAAAGACATTGATGTTTGTTCACATAAGCCTTGATATAGATTCAATAGGAGAAAGCATCAGCACACTGAAGTTTGCTGAGAGGGTCTCTACCGTTGAGCTAGCCACTGCTCGACTAAATAAGGAAAGTGCTGAAATCATTGAACTCAAGGAGAAGCTAGCTAGGCATAAAGCCACAGTTTCAAGGAGGGGAAAAGATTCAGATTACCTTCAATTTATGACACCTACCCTTAATGCGTCAAAAACAAATCTTAGATCATCGTATCTTGCATATTTGAACAGACGATATCAAGATGATGTTTTAAGCTATGAAAGCAGCAATCATAAACAACCGATGGAGGAAGTTCACGATGTGGAGGTGAATCAAAGATCTGCTTTAATACAAAAGAGATTAAGTGTTGATCTCCAGGAATTACTAATGGCAGAACACTCAGATGTATGGCCAGATTCTTCTTCTAGCATGAATATTTACCATGAAAATGGTAAAGAATTCAGCTCTGCAAACTTGGTCGATGAGGTCATTACCGACAAACAATATGAGGGTCGTTCTATTGCTGATTGGGTGGATGGGGATGAAGCAACCGTGCATGATTTCTTGTATCAAAAATATGTTTCTGATGGTGCAGAAGTGCTTCAAGTTCAGCAGTACGGTGGAGCAGGAAATAAGAAAAACGATAACATTGGACTTGAGATGCATAGACATCAGTTTGATTTTTCAATCCCCACTGATGTTTCAGATGATTTGGATTTTGTTACAAGCGATTCTTCAGAAACTGATGCCTTGTGGCAATTCAATACATTTTCTAAAGCTGCTGCCGTTGCTGCTGCTTCTGCTTGCACAAAAAACAAAAATGAATTTGTGATCAGGAAGCCTCAGATAAAGTCAGTCATTAGTCCAGATCTAAGAATTCCCATTCAGTCTCACATTCCATCGCCTCCATCAAGAAAAACACCAAGTGAAACCAGTAGAACATTATCAAAGCAGATGATCATGAGTGGAATGAATGGGAAAAGAGCTTCCTCAGTTGGAAAAATGCGAGCTGTACAGTGAGGAGGTTGATGTACGTGAAAATATATATAAATATATATACATATATTGTAAAGTTAGCTGAGGATGTTGCTTTCTTGATTTATACACTGAATGGGTGGCAGTAGAAAAATGCTATTGCTCTCCTCAGTTTGTTTGCTCATTGTTGATATATTGAATTGTTCAATGTTGGGTGAACTCTATAGAGTTGCACATATTTTCCTTTAGTCTTTGTTTCATTTGATTTTGTAGTGGCAATGCATTATGTTCCGATTGTAACGATAACAGTAAGATACATTAAAATATGGGTAAT

Network for GWHGAAEX012480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00307.30	CH	5	124	2.60E-14
PF00225.22	Kinesin	370	687	1.00E-103

Protein Sequence

>GWHPAAEX012480
MAAARRHEAAGWLRKIVGSAGANDLPEKPTEEEFRLGLRSGFILCTALNKVHPGAVTKVVVSSTDSMVSSDAAALSAYQYFENVRNFFVAVEEIGLPTFDTSDFEQGGQTSRIVNCILALKSHSEGKKTGGISSWKFGATVKAAVSGNAFLRKNSNSFWNSSARTRSQIGGDSYNTEKKSKFESQEMTSCSSLVRALLSDKKPEEVPTLVESLLNKVVEEFECRIARQNEVKFVSSKPFSKHKVLISPETAVTFEMNENIEDTMCTISKEESFHNNHKNAEGSKYKLLKQCLIIDQQQRHIQELRCNIQTTRACMEVMQRKCSEEMKIIGKYVSNLANISSSYHEVLEENRKLYNEVQDLKGSIRVYCRVRPSITSKFSNDTIGCFDERNITINAPSKYGKDCRKTFTFNKVFGPSASQEEIFADTKPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPHKFNQHNMGVNFRALEDLFNLAEQRRGMFAYKISVQMIEIYNEQVRDLLVSDGSNKRVGIRNSFQNKVNVPDANLFPVSSTADVIELMNIGQRNRTVGATTLNDRSSRSHSCLTIHVQGKNLTSKNILHGCMHLVDLAGSERVDKSEALGERLREAQHINKSLSALGDVISALAHKSSHIPYRNSKLTQLLQDSLGGQAKTLMFVHISLDIDSIGESISTLKFAERVSTVELATARLNKESAEIIELKEKLARHKATVSRRGKDSDYLQFMTPTLNASKTNLRSSYLAYLNRRYQDDVLSYESSNHKQPMEEVHDVEVNQRSALIQKRLSVDLQELLMAEHSDVWPDSSSSMNIYHENGKEFSSANLVDEVITDKQYEGRSIADWVDGDEATVHDFLYQKYVSDGAEVLQVQQYGGAGNKKNDNIGLEMHRHQFDFSIPTDVSDDLDFVTSDSSETDALWQFNTFSKAAAVAAASACTKNKNEFVIRKPQIKSVISPDLRIPIQSHIPSPPSRKTPSETSRTLSKQMIMSGMNGKRASSVGKMRAVQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007018	Biological Process	microtubule-based movement
GO:0008017	Molecular Function	microtubule binding
GO:0005515	Molecular Function	protein binding
GO:0003777	Molecular Function	microtubule motor activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.310
SRP064423	SRR2545915	Juvenile tuber	1.480
SRP108465	SRR5643513	five period of Gastrodia elata	5.310
	SRR5643514	five period of Gastrodia elata	7.900
	SRR5643515	five period of Gastrodia elata	5.380
	SRR5643524	five period of Gastrodia elata	7.350
	SRR5643525	five period of Gastrodia elata	1.180
	SRR5643528	five period of Gastrodia elata	1.780
	SRR5643658	five period of Gastrodia elata	1.050
	SRR5643659	five period of Gastrodia elata	0.820
	SRR5643660	five period of Gastrodia elata	1.110
	SRR5643661	five period of Gastrodia elata	1.090
	SRR5643662	five period of Gastrodia elata	1.110
	SRR5643663	five period of Gastrodia elata	0.630
	SRR5643664	five period of Gastrodia elata	0.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.470
SRP279888	Gastro	Gastrodia elata tuber	1.18
	Juven	Juvenile tuber	3.35
	Mother_Gastro	Mother tuber of Gastrodia elata	24.60
	Mother_Juven	Mother tuber of Juvenile	71.02