Gene detail

Detail information of GWHGAAEX012484/evm.TU.scaffold_44.11

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|150010238\|ref\|YP_001304981.1\|	2.00E-11	ABC transporter ATP-binding protein [Parabacteroides distasonis ATCC 8503]
KOG	KOG0054	0	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|743768332\|ref\|XP_010914443.1\|	0	PREDICTED: ABC transporter C family member 14-like [Elaeis guineensis]
Swissprot	tr\|Q9LZJ5\|AB14C_ARATH	0	ABC transporter C family member 14
trEMBL	tr\|A0A061DQQ4\|A0A061DQQ4_THECC	0	Multidrug resistance-associated protein 4 isoform 2 {ECO:0000313\|EMBL:EOX95055.1}
TAIR	AT3G62700	0	multidrug resistance-associated protein 10

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	300863	303279	+

Transcript Sequence
>GWHTAAEX012484 GGGTATTGTAGTATTTTTTAGAGTAGTTATTTTTCTTCTTAAGAAAATATAAAAAATAAATCAGTAGCGAAAAAATACAAAATGCATTATTTATATAAAGTTGTCCCTTTCAGATTGAATCACGTAATGTAGCTGCCTGCTGCAGCACATCCCTACAAAGTCTAAAGTCCGCATCTGCTGAATCCAAAGCCCTCTTTAGTTCAACTCGACGGCGCGATGGCGTCCCTGACATGTTTTCAATCTCCGGCAAGCGGCGGAGCGGGAGCGTGGCTCTTCTTCGTCTTCCTCTCACCTTGTCCCCAGCGCGCCCTTTTCACCCTACTTGACCTTCTCTTCCTCATCGCCGTCTTGATCGGGTTCATCGCCGTGGGCCAGAAGCGGATTTCCGGCGGATCTGCCGCTGATTCTGACGCCGGAAAGCCGCTCCTAATTCGTACCTCCTCTTCGTCGAGCTGCCGGCGATTCAATCTCCGGCTAGCAATCTCCAGCTTCCTCGCCGCAGTTTTTCTCATCCTGCTGATCGCATTCACGGCATTAACGTCCTCTTCTTCGTCTTTGGCGGCACCCCGCGCGGTGGAATCCGTATTCCTGTTTCTCCAATTCCTGGCGCACCTCTGCTCCGCCGTCATCCTGGTCTTTGGAATTCCCCTGCTGAGCACGCTCCGGCTGTTCTGGCTGCTGTCATTCCTGCTATCTGGCCTCCTCACGGCCTCCGCCGCCCTTCGCCTGGTCTCCTCATCGGCCGACATCCTCCTCATTCCGGACGACATCATCTCCCCCATCTTCTTCCTCCTCTCCGGCGCCCTCCTCCTTTTGCCAAGCTCCCAGCTGTCTTCAAAGCAGAAGCAGAACGTTCTTTTTCAAAGGAACGACGAGGAGGATAATGAGAATGCAACAACAGGGTACGCCACCGCCTCTGCTGCGTCCAGGCTGACGTGGAGCTGGATGAACCCTCTGCTGTCGAAGGGCTACAAGGCCCCTCTGAAGCTGGAGAACGTCCCGTCCCTCTCCCCATCCCACCGCGCGCAGCTGCTCTACGCCCGCTTCGCCTCCCACTGGCCGGCTGCCGGCGGGCGGCACCCCGTGCGAAACACTCTGCTCCAGTGCCTTTATCCCCACCTCGTCCTCACCGGCTGCCTCGCCGTCGTCCGGCTCTGCGTAATGTTCGTGGGGCCCTCCCTCATTAGGCGCTTCGTCAATTTCGCATCATCGGACAGATCCTCGTCGGAAGGATACCTCCTCTGCCTGACGCTTCTCTGCGCCAAGTGCGTGGAAGCGCTGTGCTCGCACCAGTACAACTTCCATTCGCAGAAGACCGGGATGCTGATCAGGTCGACCCTCATCAGCGCCGTCTACCGCAAGGGCCTACGCCTCTCCTGCTCCGCCCGCCGCTCACACGGCGTCGGCGCCATCGTCAACTACATGGCCGTCGACGCTCAACAGCTCTCCGACATGATGCTCCAGATCCACTACATCTGGCTCATGCCCGTCCAGGTAACCCTCGCCCTCGCTCTCCTCTGGGCCTATCTCGGCCCCCCCGTCGCCTCCGCCCTCGCCGCCCTCGCCGCAGTACTCGTCTTCGTCGTCTTCGGCGTCAGGCGCAACCGCCGCTTCCAGTCTTCCCTCATGTCCCTCCGCGACCGCCGCATGCGCGCCACCAGCGAGATGCTCGCCTCCATGCGCGTCATAAAGCTCCAATCTTGGGAACAACATTTCGCGACCCGGACGCAGGCCTTCCGCTCCAGCGAGTTCGCCTCCCTCTCCCGCTTCATGTACTCCATCTCCGGCAACATCGTCGTCCTCTGGAGCGCGCCGGCCATCGTCACTTCCCTCGTATTCGGCACCTGCATCGCCGCCGGCGTCCGCCTGGACGCCGCCGCCGTCTTTACCGTCACCTCCTTCTTCAAGATTCTGCAGGAGCCCCTGCGCAACTTCCCTCAGGCCCTCATCTCGATCTCCCAGGCCGCCATTTCCCTGCAGCGCCTCGACGCCTACATGACCAGCACTGAGCTCGACCCCACCGCCGTTCACAGATTGCCGCCATCCGCTGTCGCCGTGGAAGTTTCCAACGGGGCGTTCGGATGGGAAGATGGCGGCGAAGCTTGGCTCAAGGGAGTCAACGTCAGAATACAGCGCGGAGCTCTAGCCGCCGTCGTTGGAACCGTCGGATCCGGCAAGTCTTCCTTTCTGGCTTGCCTCCTCGGCGAGATGAACCGCCTCTCAGGCCAGGTTCGGTTCTGCCGCTCTCTCTCTCAGCCGCCACAGTAACATTTTAACCGAACTAATGTTAATATTATATTACAAAAGTACCTGCTTTACCGCTAACCAACTAAGATAAAGGCATTCAAACCTAATCCCGACTCCTACCTTGGGGAGATATAAAAGAAGCACACAAGGACACAATGTTATTCATTATT

Network for GWHGAAEX012484

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	303	570	3.20E-26
PF00005.26	ABC_tran	631	674	4.60E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.310
SRP064423	SRR2545915	Juvenile tuber	17.070
SRP108465	SRR5643513	five period of Gastrodia elata	56.020
	SRR5643514	five period of Gastrodia elata	50.650
	SRR5643515	five period of Gastrodia elata	53.850
	SRR5643524	five period of Gastrodia elata	55.990
	SRR5643525	five period of Gastrodia elata	2.100
	SRR5643528	five period of Gastrodia elata	10.680
	SRR5643658	five period of Gastrodia elata	3.070
	SRR5643659	five period of Gastrodia elata	38.140
	SRR5643660	five period of Gastrodia elata	41.770
	SRR5643661	five period of Gastrodia elata	41.160
	SRR5643662	five period of Gastrodia elata	45.440
	SRR5643663	five period of Gastrodia elata	28.960
	SRR5643664	five period of Gastrodia elata	34.630
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	76.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	82.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	88.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	123.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	72.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	77.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	72.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.880
SRP279888	Gastro	Gastrodia elata tuber	24.72
	Juven	Juvenile tuber	48.99
	Mother_Gastro	Mother tuber of Gastrodia elata	100.95
	Mother_Juven	Mother tuber of Juvenile	113.49