Gene detail

Detail information of GWHGAAEX012486/evm.TU.scaffold_44.13

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427737935\|ref\|YP_007057479.1\|	2.00E-29	50S ribosomal protein L11 methylase [Rivularia sp. PCC 7116]
KOG	KOG1500	0	Protein arginine N-methyltransferase CARM1
nr	gi\|743785067\|ref\|XP_010921814.1\|	0	PREDICTED: probable histone-arginine methyltransferase CARM1 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q7XI75\|CARM1_ORYSJ	0	Probable histone-arginine methyltransferase CARM1
trEMBL	tr\|M0RTX6\|M0RTX6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P20460_001}
TAIR	AT5G49020	0	protein arginine methyltransferase 4A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	308945	375214	-

Transcript Sequence
>GWHTAAEX012486 TCCGCGTTAAAATCCTACCGAAAGAGTCCGCTGAATCTCGGGGAAAAAACAAATGTTGAGGTAAACGCGGAGCAAGAAAAGCCGCTGTTAATTATTTATTTATTATTTCATTAAAGCAGCAGCGCAACTCCCTCACCTTCTCCTGCGGCGGCTGTGATTTCCGCCACTCCACCACCTCGCTTCTGCTATCCGAACCCTAAAAGTTCCCCTCAGCTTCTCCTTCCAGCCCTAGCCTTGCGAGATTTGCCAGAAACCGGAAGCCGGAGGCCGGAAGCCGGAAGATATGGAGTCTCCATCAGAGAGGAAGTCTAGGCGCAATCAGAACTTCACATGCGTTTTGGAGGATCTGTCGCCTTCGACGTCGTCCCCTCCCCTTCCGCCGACCATAACCATCTCCCTCTCTGCCGCTAACTCTGGTGCTGCCCAGCTTCATCTCCGTCATCCCGAATCGTTTGAACTGATCTCCTGCTTCGAACTCCGCAATTCCCAGCTCGTTACTCTCGGACCTTTGGAGACGTTAGTCATAGTCGGAGAGACATTAAATAACGAGGTCAAAGAGAATTCATCTTTTTCAAAAGCTTTCAAGCTAGGATTCAGAACATCTGATCAAAGGAGAGCCTTTGACACAGAATTTGAACAGTGGAAGCATGGAGTGTCACATACACAAAATGGAACTTTGGAAAATGGATCTATGATGCCTTCTAAAAATAAATTTGATAACAAAATAGAAGCTTCTTCTGCCAAAATGTACTTTCATTATTATGGTCAGTTGTTGCATCAGCAGAATATGTTACAAGATTATGTCAGGACAGGAACCTACTATTCTGCAGTAATTGAAAATTCTATAGATTTTCAGGATCGCATTGTTGTGGATGTTGGTGCAGGCAGCGGTATACTCTCACTCTTTGCTGCCCAGGCCGGTGCCAAACATGTGTACGCTGTAGAGGCATCCGAAATGGCAGAATATGCTAGCAAGCTTATAGGAGGGAATCCATCTCTTGGGCATCGCATAACGGTTATCAAAGGTAAAATTGAGGATGTTGATTTACCTGAGAAAGCAGATATTCTTATATCAGAACCTATGGGTACGTTGTTAGTCAATGAAAGGATGTTGGAGACGTACATCATTGCAAGAGATAGATTCCTTATGCATGATGGGAAAATGTTTCCGTCAGTAGGACGGATTCATATGGCTCCTTTTAGTGATGAGTATCTTTTTGTTGAAATTGCAAATAAGGCTCTTTTCTGGCAGCAACAGAACTTCTATGGTGTTGATTTAACTCCCTTATATGGATCTGCATTCCAAGGATATTTCTCTCAGCCTGTCGTTGATGCATTTGATCCTAGGCTTTTGGTCTCTCCACCTACATTCCACACATTGGATTTCAGTTTTATTAAGGAAGAAGAGCTATACGAAATTGACATCCCACTAAGTTTTGTTGCTACCGTAGGAACAAGAGTTCATGGACTTGCTTGCTGGTTTGATGTCTTGTTCAATGGAAGTTCTGTTCAAAGATGGCTTACAACTGCTCCTGGTTCTCCCACCACCCATTGGTACCAGATGCGCTGCGTGCTCTCCCAGCCCATTTACGTCATGGCTGGTCAAGAAATAACTGGGCGACTTCACATGGCGGCCCACAGCGCTCAGAGCTATACTATTTATTTGACTTTGTCAGCCAAAATGTGGGGGGCCGGCGCTGAACAAGGCGGAATATTACAGACATCCACCGGTAAATTTGAGCTCAAGGAACCATACTATCGGTTGTCTCAGCCGCAGCCTTACATTCCTGTACAAGATCAACAGCTTCCCCAGCAATTTATAGCCACCGCACAGGAAGGAAATGCTTCGAGTATATCTCCACAGCAGCAACAAAATTTGGGGGGCATAATGAACCGGTAATTTCAGCTCCCCCTGCATTCTTTCTCCTTGTAAGCAAAGCAGCTCATATTCTCTATATGAAAATGTGCTTGTTTACCGATGTGTTTCGTTATCAAATTCTTTGTTTAAATGTTCTGTTTATCAGCAATTGATCTATTGGAATCACAATACATATTTAAGTGCGTTTGTTGGAACGTGTTCTGTAATAACTATTATTTGCATCATAGATGTTTCTATGTGCGTTTATTGGAACGTGTCCTAAAGGCAAACCTGCTTCTCAAATATTTTACTGCCTAGAAAAATGATGTTTCTTTCTAATAAAATTCATACTGTGAAGT

Network for GWHGAAEX012486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06325.12	PrmA	191	232	2.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006479	Biological Process	protein methylation
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.440
SRP064423	SRR2545915	Juvenile tuber	31.490
SRP108465	SRR5643513	five period of Gastrodia elata	35.030
	SRR5643514	five period of Gastrodia elata	37.650
	SRR5643515	five period of Gastrodia elata	36.560
	SRR5643524	five period of Gastrodia elata	37.220
	SRR5643525	five period of Gastrodia elata	32.090
	SRR5643528	five period of Gastrodia elata	31.570
	SRR5643658	five period of Gastrodia elata	36.280
	SRR5643659	five period of Gastrodia elata	22.660
	SRR5643660	five period of Gastrodia elata	24.730
	SRR5643661	five period of Gastrodia elata	23.640
	SRR5643662	five period of Gastrodia elata	20.520
	SRR5643663	five period of Gastrodia elata	22.760
	SRR5643664	five period of Gastrodia elata	19.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	64.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	59.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.420
SRP279888	Gastro	Gastrodia elata tuber	17.89
	Juven	Juvenile tuber	22.32
	Mother_Gastro	Mother tuber of Gastrodia elata	30.37
	Mother_Juven	Mother tuber of Juvenile	25.76