Detail information of GWHGAAEX012488/evm.TU.scaffold_44.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292493898|ref|YP_003529337.1| | 0 | sucrose synthase [Nitrosococcus halophilus Nc 4] |
| KOG | KOG0853 | 0 | Glycosyltransferase |
| nr | gi|743844527|ref|XP_010938368.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: sucrose synthase 4-like [Elaeis guineensis] |
| Swissprot | tr|Q10LP5|SUS4_ORYSJ | 0 | Sucrose synthase 4 |
| trEMBL | tr|A0A096T792|A0A096T792_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G318780_P02} |
| TAIR | AT4G02280 | 0 | sucrose synthase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 380910 | 400694 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012488
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00862.18 | Sucrose_synth | 8 | 553 | 3.50E-282 |
| PF00534.19 | Glycos_transf_1 | 567 | 737 | 9.50E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00695 | E2.4.1.13 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005985 | Biological Process | sucrose metabolic process |
| GO:0016157 | Molecular Function | sucrose synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.620 |
| SRR2545915 | Juvenile tuber | 47.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 63.350 |
| SRR5643514 | five period of Gastrodia elata | 65.580 | |
| SRR5643515 | five period of Gastrodia elata | 66.410 | |
| SRR5643524 | five period of Gastrodia elata | 68.570 | |
| SRR5643525 | five period of Gastrodia elata | 76.430 | |
| SRR5643528 | five period of Gastrodia elata | 90.340 | |
| SRR5643658 | five period of Gastrodia elata | 83.950 | |
| SRR5643659 | five period of Gastrodia elata | 58.740 | |
| SRR5643660 | five period of Gastrodia elata | 59.140 | |
| SRR5643661 | five period of Gastrodia elata | 59.970 | |
| SRR5643662 | five period of Gastrodia elata | 56.160 | |
| SRR5643663 | five period of Gastrodia elata | 58.420 | |
| SRR5643664 | five period of Gastrodia elata | 62.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 72.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 82.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 75.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 76.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 83.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 90.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 71.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 80.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 73.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 73.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 83.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 83.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 73.52 |
| Juven | Juvenile tuber | 81.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.75 | |
| Mother_Juven | Mother tuber of Juvenile | 99.81 |