Gene detail

Detail information of GWHGAAEX012489/evm.TU.scaffold_44.16

Functional Annotation

Database	Orthologs	E value	Annotation

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	400947	403290	-

Transcript Sequence
>GWHTAAEX012489 TCAAATAACTCTATTTAAATAAGAAAATGCTAAGCCTCACCATCTATGAATTAACACAAAACCTACACACCATTAACAAATATAATAAAATCTGATTGGAACATCTATTTGAGATAAACTAAATTCTATTGGAGAGAAAATACAATTTAGTAACCTCCTGATATAAGGTTTTAGATTTGGAAACAAAATCTCACTATTTCATATATGTCTAACTATTGATCGTCCAAGAGATTGCCAAATACTCCTAATCTATCTTTTGTTCGCCAAATACTGCTAATCTATCTCTTGCTCTTACATCAAATTCTTGATCTACTGTGATCGATACTATTTCCTTAAGAAAAACTCGTGATCAAAGCCACCTTAATCCGGGCTGCAGGAGCAGACGCCCAAGGATGAGAACCAAAAGCAAAAGCATACAGAATGCGGTAAATCAGCAAAAGCCTTTCACCTCTGCAGAACCTAAGCTCGCAGCAGCCCTAGAGGCCGCGATGGCTCGATGCCCTAATTGCAACAGCGACAAATGGTCGAACGAATAGAAGAAAAGATGGGGAAGTAAAAAACGAAGAGCCGCAGCGAGGAACATTTAATGGCTGCCAAGAAAATAAGAGAACATTTCATTTCAAATACATCAACTGATGGCATCCACCACTGTTCTTACTTACCCTCAGCGCATCACCATCAATGGCAGTTGTCGCCTCGGTTTCTACACTGCTTTCGATCGTTCCCGCCTTGCAACTCGAAGAGGCGGTGAATTTTTAAATATATGAATGGAAGGCAATGATGCGATCAAGCAGCCTATAAATACATTACACATTGCGTATGCATTATCATTAGTTCAACAGCAAGCGAGTAACTATCATCGCCGCCGGCGATGGCTGCTGAGAGCGGGGCTGATCGGACGACTGTGGTTGCTTTGGATTTGGGAAAGTCTCCTCTACGAGTGGGAGTGCTGCTCGATAGAAAAACCGGCAGATACGCTGTCATCAAAGGATCTAAATATGCAAAGGTGGACGGCGACGTCGCCCCGAGCAGGGGAGAGCTCCTCTGGAGCTATCGAAATGCCCGAGACATAGTGAAGTCGTTGATGGGTGAAGAAGGCGGCGATGAGATTGTCGTCGAAGCCGCAGTGGTCGTCGTCCCCAACGACACCTCTCAGACGAACCGTGATGCCATCGCGCTTGCCTGCCGCGGGGAAAGAAGCGGCCTTAATGTTGCGAACGTGCGTGTGGTCCACGAGTACGAAAGCGTGGCGGCGGCCTACGCTGACAGAGTGAAGCCCAGCAAGGTGAAGACTCTGGCAATCGTCTCCATCACCGGAGGCATCATCGACCTGAGCGTGATCTCCATACACCCCCGGTATCTGCGGCGGGAACAGTACGAGTACTGGCTGGAGGCCCGTGTGGCGCATCTGGAGCACGTCATCAACTTCGCCTGTCTCGACCAGATGGATAAGATCCTCGCTCAAAAAGAGCTCTACTACATAAGCAAGATTCCGATCATCGGCGGTATTGTTGGCCATACTAAGGAACTTTTTAGTGCACTGTTGGCCGGCGGGAAAGAAATCTTGTTCTCAAATCCCAACTTGATCAAGCCGTCGGCGGCTGCGGTGGACGCGATCGTGTTCGTCGGCAATGAGCCGGCGCGGTTGTCTCTGCAGGAGCTGGTTAAGGTGAGGTATCCAAATGCCAGAGTGTGGGATGACATTGACGTGGATGAGATTGCCGCTCATGGAGGCGCCGTGCTAGCTTATGATAGCACCAAGCCGCCGCCGCCGCCGCCGCCGCCATCACGAAGGTAGAAGAGGAAAGCAACTACAACCAAACATACGAAGTTTGTGGGAATAATTGGGTGGATAGTCGTAGACAAGAAAATGGAAAAGAAGTTTGGTGGTGGAGGGGAGACAGCCAATGAGAAACGTAGCACTTGGTCCAAAGAAATTGGGAGTTTTTATAAGGTGATGCTGTTTTACGTTGCGACATCCCATATGAAATGCAATATTTTCTTTTTGTAGAAACAGAAATACAAAACCTATTTCTTACTAACAAATGAAGTGTATTACTGTGTGGATCTCCTAGTGCAATCATGAACGTTGAATGAGTGCAGTGTGGATTCCGGAGGATATAGAGTCTGGAACAACAGGATCCTTTAAGAATTGTTTGATGGGTCGTAATGTCTTATGTTTCAAATCCAATAGCAGTGAAAATACAAAGCAATTATTGTCTTATGTGAGTTAGTGAACAGATAGAAGATTGTGCAGTGACGAAGGAAC

Network for GWHGAAEX012489

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.170
SRP064423	SRR2545915	Juvenile tuber	0.450
SRP108465	SRR5643513	five period of Gastrodia elata	0.480
	SRR5643514	five period of Gastrodia elata	1.070
	SRR5643515	five period of Gastrodia elata	1.120
	SRR5643524	five period of Gastrodia elata	0.430
	SRR5643525	five period of Gastrodia elata	0.200
	SRR5643528	five period of Gastrodia elata	0.070
	SRR5643658	five period of Gastrodia elata	0.100
	SRR5643659	five period of Gastrodia elata	1.290
	SRR5643660	five period of Gastrodia elata	0.940
	SRR5643661	five period of Gastrodia elata	1.830
	SRR5643662	five period of Gastrodia elata	1.460
	SRR5643663	five period of Gastrodia elata	2.890
	SRR5643664	five period of Gastrodia elata	1.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.280
SRP279888	Gastro	Gastrodia elata tuber	0.23
	Juven	Juvenile tuber	0.34
	Mother_Gastro	Mother tuber of Gastrodia elata	0.37
	Mother_Juven	Mother tuber of Juvenile	0.34