Gene detail

Detail information of GWHGAAEX012492/evm.TU.scaffold_44.19

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262197379\|ref\|YP_003268588.1\|	4.00E-168	acyl-CoA dehydrogenase domain-containing protein [Haliangium ochraceum DSM 14365]
KOG	KOG1469	0	Predicted acyl-CoA dehydrogenase
nr	gi\|672143765\|ref\|XP_008795765.1\|	0	PREDICTED: acyl-CoA dehydrogenase family member 10 [Phoenix dactylifera]
Swissprot	tr\|Q75IM9\|IVD_ORYSJ	1.00E-20	Isovaleryl-CoA dehydrogenase, mitochondrial (Precursor)
trEMBL	tr\|A0A067K6E8\|A0A067K6E8_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP27835.1}
TAIR	AT3G06810	0	acyl-CoA dehydrogenase-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	436961	485111	+

Transcript Sequence
>GWHTAAEX012492 CATGGCAACGAAGACGTCGAATCTTCACAGTCAAGTGGCTCCCGCTCACCGTTTTGATGAGGCAGCTCTCTTCCGTTATGCTGCGGTTAATGTAGAGGGATTTCCTGGTACTTCTAACCGTTTCGTTGTCTCGCAATTCGGCCATGGTCAGTCCAACCCTACCTTCCTTTTCGAAGTTTATCAGGGCACCGGAGATTTTACCGGAGCACCTTCTAAGCGATATGTTCTCAGGAAGAAGCCCCCGGGAGTTCTTCTAGAGTCCGCCCATGCCGTTGAGAGAGAATTCCAGGTTCTCAAAGCTTTGGGTGATCATACTGATGTTCCGGTTCCAAAGGTTTTTTGTTTGTGCAATGATCCTGGCATAATTGGGACACCCTTTTATATTATGGAATACCTGGAAGGGCGTATATTTCTGGACAGCAAACTACCGGGAGTGCCCCCTAAAACTCGAATGGCTATATATCAAGCTTCTGCCAAAGCTTTATCTTCCTTGCATAGCGTTAATGTTGATGCTATTGGTCTAGAGAGATTTGGTAGGAGGAATAATTACTGTGAGAGGCAGGTTCAAAGATGGGAAAGACAATATATCTCTTCTACCGGTGAAGGAAAACCTTATCAAAATCATAAAATGCTAGAATTGGCTAATTGGCTAAAGAATAACGTACCGTTTGAAGATTCTTCAGCTGCATCTGGTTTGGTTCATGGTGACTTTCGGATTGATAATCTTATCTTTCACCCTGTAGAGGATCGAATTATAGGAATACTTGATTGGGAACTATCGACACTTGGAAACCAAATGTGTGATGTTGCATATTATAGTTTGCCTTATTTTGTAGACTCAAAGCTATCTGGAGATGGTCCATATGGAGGATTTGAAATCTCTGGGAGACCTAAAGGCATTCCATCTCTCCCAGAATATCTTGCTGAGTACTGCTTAGCATCTGGAAAGCCTTGGCCAGTTTCCGAGTGGAAGTTTTATGTTGCATTTTCCATGTTTCGTGGAGCCTCTATATATGCTGGAGTTTATCACAGATGGACGCTGGGTAATGCTTCTGGTGGCGAGCGTGCGCAGCTTGCGGGAAAGTTGGTTAATATCTTGATTGACGCTGCCTGGATGGTGATCAATACTGAATCCTTGCTTCCCAACAAACCTCCATTTGGTAATGCAATATCAAGAGACCTCAATGAACATCTGAGCCAGCCATCAGAAAAACAGTGCAGATTTATTCCAAGCCAAAGAGTTTTAGATCTGAAAAGAAAATTAGTGCAATTCATGGATAATCATATATTTCCAATGGAAAAAGAATTCTCCAAACTGGCAGAATCAAGTTCACGTTGGACTGTACACCCTGAAGAAGCAAGGCTTAAAGAATTAGCAAAGGGAAAAGGCTTATGGAACTTGTTTATACCATTGGATAGTGCTGCCAGAGCAAGGAATATACTATTCTCTGGGAGCAATTCTGAAGATTTAGGTGTTCACAGCAATTTGCTTGGGGCAGGTCTTTCCAACCTTGAGTATGGATATTTGTGTGAAATTATGGGTCAGTCTATCTGGGCCCCACAAATTTTTAATTGTTCTGCTCCTGACACCGGGAACATGGAGGTACTTTTGAGGTATGGCACCATGGATCAGCAGAAAGAATGGCTGATTCCTCTACTACAAGGGAAAATAAAATCTGGATTTGCTATGACTGAGCCGAAAGTTGCATCGTCGGATGCAACTAACATTGAATGCTCAATAAATAGGTGTGGTGATTCGTACATCATAAATGGAAGGAAGTGGTGGACCAGTGGAGCTATGGACCCAAGATGTAAACTTTTGATTGTGATGGGAAAAACAAGCTTCAGTGCGGCCAAGTATAAACAACAATCAATGATTCTGGTAGACATCAACACCCCCGGCGTCCGTGTCGAGAGACCGTTGATGGTATTTGGCTTTGATGACGCTCCTCACGGTCATGCTGAAATATCTTTTGAGAATGTTCGAGTTCCGGTGGCGAATATCCTGCTAGGAGAAGGAAAAGGATTTGAGATAGCTCAGGGCCGGCTTGGGCCCGGCAGGCTGCATCATTGCATGAGATTGGTCGGCGCCGCGGAGCGCGGAATGCAGCTTATGGTTGAAAGAGCTCTCAATAGGAGAGCCTTTGGAAGATTAATTGCCGACCACGGCTCATTTCTCTCCGATCTCGCTAAGTGCCGGATAGAACTGGAGCAAACGAGGCTGTTAGTTCTTGAAGCAGCGGATCAGCTGGATCGATACGGGAATAAGGAAGCCAGAGGGATCCTAGCCATGGCTAAGGTGGCTGCGCCGAAGATGGCTCTGCGAGTGCTCGACGCCGCCATACAGGCGCACGGCGCTGCCGGATTGTCCGCTGATACCGCACTTTCCCATTTGTGGGCAATGGCGAGAACCCTAAGGATTGCAGACGGCCCCGACGAAGTCCATCTCGGAACCATAGCCAGGCTCGAAATACAAAGAAGATCCAATTTATAGTTTTACTTGCGCTGGCTGGGATGCTGCTATACATACATAAAATATAAGATATTCTTATTCTTACTTTTGCTTGCAATTTAATTTAATTAATTATTTAAAGTAAAATATTATGATTACATAAGAATATACATCAAAAA

Network for GWHGAAEX012492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01636.22	APH	43	271	2.20E-39
PF02771.15	Acyl-CoA_dh_N	417	555	1.20E-07
PF02770.18	Acyl-CoA_dh_M	560	661	8.60E-17
PF00441.23	Acyl-CoA_dh_1	673	821	4.50E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00249	ACADM, acd	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Fatty acid metabolism	map01212
		Fatty acid degradation	map00071
		Cysteine and methionine metabolism	map00270
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016627	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.230
SRP064423	SRR2545915	Juvenile tuber	51.730
SRP108465	SRR5643513	five period of Gastrodia elata	40.000
	SRR5643514	five period of Gastrodia elata	45.270
	SRR5643515	five period of Gastrodia elata	37.140
	SRR5643524	five period of Gastrodia elata	41.070
	SRR5643525	five period of Gastrodia elata	20.910
	SRR5643528	five period of Gastrodia elata	19.130
	SRR5643658	five period of Gastrodia elata	23.070
	SRR5643659	five period of Gastrodia elata	27.560
	SRR5643660	five period of Gastrodia elata	28.530
	SRR5643661	five period of Gastrodia elata	29.910
	SRR5643662	five period of Gastrodia elata	27.380
	SRR5643663	five period of Gastrodia elata	33.310
	SRR5643664	five period of Gastrodia elata	32.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.590
SRP279888	Gastro	Gastrodia elata tuber	36.49
	Juven	Juvenile tuber	42.27
	Mother_Gastro	Mother tuber of Gastrodia elata	27.30
	Mother_Juven	Mother tuber of Juvenile	25.46