Gene detail

Detail information of GWHGAAEX012494/evm.TU.scaffold_44.21

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2811	5.00E-129	Uncharacterized conserved protein
nr	gi\|672179799\|ref\|XP_008810074.1\|	0	PREDICTED: tRNA:m(4)X modification enzyme TRM13 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|V7C7A6\|V7C7A6_PHAVU	1.00E-167	Uncharacterized protein {ECO:0000313\|EMBL:ESW25243.1}
TAIR	AT4G01880	5.00E-129	methyltransferases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	493364	496015	-

Transcript Sequence
>GWHTAAEX012494 GGAGATTTGCATAAAGCAGGAATGACAGCGTCAAAATTAAGATGATCCTAGGTAAATAAAACAGAGAAAATGACCTAAATAGCCTCTATGCAGCAGAAATAGTCCCCATTCCCAGAATATTGAAAGCATTTGGGTGGATCTGCAGTCGTCAGAGATGAAAGCATTTGGTTGGCATCCCATAATGCTTGCTAACCACCTTTTAAATAACCAAACATATGTCTCCACCGTTTCATCTGAAAGCAAAGCACAGCCCAATAACACTGTTTGGCCATGATGATTAGCTCCAACGAATGAAACAAGGGGCAAATCATACTTTACAGTCAAACAGGTTGTATCAAATGATACAACATCACAAAAATATGAGGATGCAGTCCGTCTTGGCGGTCCCGCCTTGCTTGATAGCATGCGTCCGCTCGTCCGCTGCCCGCTCGAGGGCATCCAAGTAAAACTCGCCTGCACGTTCCAGATTTTGAAAACCATGATTCTTTTACAATTACACCGAAGCCTATTCGTAGAGCATACTTCTTATAGAAATTAGAAACTCCCAACATATGTTTTGAAGGTCATTCCAACATTAGGTGTCACTTTTGTCGTCATCAGCAGCAACATCAGGAATTAGTTTCCTGGTATCATCTTTTGGCGAGCGTGCGCATGCGCACAGTGGAACTCTTTTGGGCCCCAATTCCTAGTGTCAAAATGTTCTATTTAGGCTGGCAAGAACAGTGGATCTCATATTAAAATTCAGAATTTTTGAGAGATATTTAGGAGCCTAATAAATTTTTTCATAAATTTAATCAATAATATTTATTATTTGAGAAAACGTTAATTTACTTCGTTAAAGTTGAATTAATTAAAAAATTGAAGAACATACTAGACATGTATATATCGCATTATTTTCCGGCCGTAGGGTTAGTGGGTTCGACTGGGACCAAATATGTCTCGCCCCTGTTCGATTCAGAGGATTGAAAACCCTAAATGCCCAGCCGAAGGAGAAGCAGCAAATGATCATAAGGAGAAGCGCTGTCAATTCTGGCTTCCAAACAAGCGCCGCTACTGCGCCAACTCTCGCCTCCCTTTCTCCCTGTTTTGCGGTAATCACAATTCCTCTCCCGGCGATGGACGCCTCCCTTGCCCTCTCGATCCCTCGCACTCTGTTTTTAAAGGAAATCTGGAGTCCCACCTCAAGAGGTGTCCATTCAGGAAACAGGCTCTAGCCCTGGAATCCCATGCCTACTACTCCAAAGGAATCAACAGCTGCATTACCGATTCTGCAGACGAGGACATCAGCAGCTCCGAGGCCAAGAGGGCGGCCATCCATGGGCTCGAGTTTCCAGAATTCGTCGCTCTAGTGAATAAAATAGAATCTTTGCACACCTCCGCAGTAGCCGATCTCCAAGACTCCTTCCTAACGCCGGATTCATGCGCTGCGCATTGCCTGAGGAGGCAAACAGACGGAAAAATTCCGTATCAGGAGAGGCATGCTCTGCAGCAGGCATCCATTCTTGGCAACATGGAGAAATTCGGGATTTTGAAGAAGCCAAAGGAGGAGCTTGATAGTTCATCCAGAGAATTGCCAGCGGCGGTTGAATTCGGTGCAGGGAGAGGCTATCTTGCTCATATGCTTGCAGACTCTTATGGGATCAAGAGGATTTTTCTTGTAGAACGCAGGTCTTACAAGCTCAAGGCTGAAAGAAGCCTGCGGAAAAATGAGAGCGTATCTCTAGAGAGATTGAGAATTGACATTGAAGATCTGGACATGAAAGCGGTGGAATCTCTCAATGGGCTTCCATTCCTTGCTGTGGGAAAGCATCTGTGCGGCAATGCTACGGATTTGACTGTCAATTGCTGTCTCTCTCGGAAAGACTTTTCAAGCGGCAGTCTTCTGCAAGGGATGGCTTTGGCGACATGCTGCCACCATCTCTGCAAGTGGAAGCATTACTTGAATAGAAGGTTTTTCCTTGATCATGGCTTCACCAAGCAGGATTTCTATGCCATTGCTTGGTTCAGCAGTTGGGCAGTAGATGGGGATCACAGCTCCTGCTCTTCTGATCATTCCGAAAGCTGCATCATGCTGATAAATGCCGGCGACGGCTACAAAACTGTTGAGGAAACTATCAGAGGCATGGAGCCAGCCCAGAGGGCGGCTTTTGGTTTCAAGTGCAAAGATATTATTGACATGGGGAGGCTTCTATGGCTTAGAGAACATGGGTTGAATGCAGCTCTTGTTAAGTATGTGCCTCTCAGAATTTCTCCTGAGAACCATTTGTTGTTGGCAAAATTTCTTTAGGGGGATGTTTGTATTCAAAAGGATTTATTTTAAATAGGATTTACTAAATCTTTAAATTCAGATTTAATAAAATCTTGAAGATGTTAAATCCTTAAATTGTTTAGCACAGGATTTGATTATGAATCATATTAAATCCTGAAAATTATTTGCCTCAGAATGTACTCTTGTGAACTGTAACATTTGTTTTGATCTTCTATATTTTGTATTCATAGTTCAAAG

Network for GWHGAAEX012494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11722.7	zf-TRM13_CCCH	29	55	3.80E-11
PF05253.11	zf-U11-48K	63	87	2.60E-08
PF05206.13	TRM13	185	448	5.30E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008033	Biological Process	tRNA processing
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.060
SRP064423	SRR2545915	Juvenile tuber	6.200
SRP108465	SRR5643513	five period of Gastrodia elata	5.950
	SRR5643514	five period of Gastrodia elata	5.390
	SRR5643515	five period of Gastrodia elata	4.350
	SRR5643524	five period of Gastrodia elata	4.560
	SRR5643525	five period of Gastrodia elata	6.350
	SRR5643528	five period of Gastrodia elata	4.640
	SRR5643658	five period of Gastrodia elata	5.860
	SRR5643659	five period of Gastrodia elata	8.820
	SRR5643660	five period of Gastrodia elata	9.010
	SRR5643661	five period of Gastrodia elata	6.540
	SRR5643662	five period of Gastrodia elata	7.950
	SRR5643663	five period of Gastrodia elata	7.440
	SRR5643664	five period of Gastrodia elata	7.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	7.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.400
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.400
SRP279888	Gastro	Gastrodia elata tuber	9.85
	Juven	Juvenile tuber	10.51
	Mother_Gastro	Mother tuber of Gastrodia elata	6.60
	Mother_Juven	Mother tuber of Juvenile	5.24