Detail information of GWHGAAEX012496/evm.TU.scaffold_44.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392402596|ref|YP_006439208.1|3.00E-45Methionine sulfoxide reductase B [Turneriella parva DSM 21527]
KOGKOG08567.00E-73Predicted pilin-like transcription factor
nrgi|359496244|ref|XP_002265129.2|8.00E-85PREDICTED: peptide methionine sulfoxide reductase B5-like isoform X1 [Vitis vinifera]
Swissprottr|Q6AUK5|MSRB3_ORYSJ1.00E-76Peptide methionine sulfoxide reductase B3, chloroplastic (Precursor)
trEMBLtr|F6I1B3|F6I1B3_VITVI3.00E-85Putative uncharacterized protein {ECO:0000313|EMBL:CCB60729.1}
TAIRAT4G048007.00E-73methionine sulfoxide reductase B3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000045509011514617+
Transcript Sequence

Network for GWHGAAEX012496

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01641.17SelR781961.10E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0033743Molecular Functionpeptide-methionine (R)-S-oxide reductase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.500
SRR2545915Juvenile tuber19.890
SRP108465SRR5643513five period of Gastrodia elata42.600
SRR5643514five period of Gastrodia elata51.530
SRR5643515five period of Gastrodia elata42.990
SRR5643524five period of Gastrodia elata47.990
SRR5643525five period of Gastrodia elata47.840
SRR5643528five period of Gastrodia elata34.570
SRR5643658five period of Gastrodia elata46.500
SRR5643659five period of Gastrodia elata49.790
SRR5643660five period of Gastrodia elata45.750
SRR5643661five period of Gastrodia elata47.670
SRR5643662five period of Gastrodia elata58.810
SRR5643663five period of Gastrodia elata52.250
SRR5643664five period of Gastrodia elata52.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_145.810
SRR6049655Rhizomagastrodiae_C368-T10_good_152.140
SRR6049656Rhizomagastrodiae_C368-T07_good_144.940
SRR6049657Rhizomagastrodiae_C368-T07_good_146.790
SRR6049658Rhizomagastrodiae_C368-T04_good_151.370
SRR6049659Rhizomagastrodiae_C368-T04_good_141.040
SRR6049660Rhizomagastrodiae_C368-T01_good_143.120
SRR6049661Rhizomagastrodiae_C368-T04_good_138.460
SRR6049662Rhizomagastrodiae_C368-T01_good_150.680
SRR6049663Rhizomagastrodiae_C368-T01_good_141.630
SRR6049664Rhizomagastrodiae_C368-T10_good_147.780
SRR6049665Rhizomagastrodiae_C368-T10_good_147.780
SRP279888GastroGastrodia elata tuber 70.60
JuvenJuvenile tuber72.84
Mother_GastroMother tuber of Gastrodia elata 47.69
Mother_JuvenMother tuber of Juvenile 46.54