Gene detail

Detail information of GWHGAAEX012504/evm.TU.scaffold_44.34

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	1.00E-122	FOG: PPR repeat
nr	gi\|743858908\|ref\|XP_010942480.1\|	1.24E-180	PREDICTED: pentatricopeptide repeat-containing protein At2g30780 [Elaeis guineensis]
Swissprot	tr\|O49343\|PP177_ARATH	3.00E-123	Pentatricopeptide repeat-containing protein At2g30780
trEMBL	tr\|M0TMZ5\|M0TMZ5_MUSAM	8.00E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P05920_001}
TAIR	AT2G30780	1.00E-122	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	539551	545296	-

Transcript Sequence
>GWHTAAEX012504 GTTTTATGTTAAAAATATTTAAAAAATAATTTTATAGTTGTAAACATCAAAAAATCTTGGTATATACATAATAATCCCTAAATTTATATATGTGTGTTATTATCAAATATTAAAAAATTCCGGTGTAGTTAGAATTTTTTTATATGTTCGGTTATTTACTATTATATATTTATTTTTCCTATCCTAAATGCAAGACTGTGGTAGTCGATCGAACGGCATGCGTTTAGAACCCTAAAAAAAACCAATGACGCTGGTGATCTCGTCGCCGCCATGGCGAACCCGAGCCATCTCCAGCTCCTCCTCCGCAGGTGCTTCGCTCGAGCCTCTCTCCCTCGTTCCCGTCCTCTTCCTCTCCTCATTCCCTGCTCTGATATCATGTCATCATCCTTTTCCGTCTGTGATCGCTGGCTATCATCCTTCTCAGCCTCCGATGACATCGCCGACCTACGTGAGCGCATTCTTCTTCTCACGGAGAAGCACAGATCTCCTTCCCGCGATGCAGAGCTCGATGAAATCCGCCCCCTGATATCCTCACTGGCCAACGAACTCCTCAACGCAACCCACCTTTCCGATTTCGAAAACAATATCGCCAATGTCACAGCCTTTCTTGATTCCCGCTCCGCCGTTTCTCTTCTACGCCGATCTCCCTCGGGTCTCGCCTCTGTTGAGCTGCTCATTCGCCTTAAATCTCGTCCCAGCCTCGCCGTTCAGGTTTTTCTATGGCGGCTGAATCAGGTGGATGCCGGCGTGAAGCTTTTTCCAGAGGAGTATGCCAAGGCCATCTCTCTCGCTGGTCAGTCCAAGAAGGTCGACTTTGCCGGCGACCTTTTCGCTGATGCTACCCGCCGCGGCATACGAAGCACAAGCATGTACAATTCTCTCATGGCCGCCTACATGTACAACGGCCTTTCTTCCAAGGCCATTTCCGTCTTCGAGGATCTCCTCCGCGATCCTGTCTGCAAGCCCAGCATCGTAACTTACAATATCCTTCTATCCGTTTACGGAAGATTGATGCTCATCGACAAGTTGGAGAATGTTCTTAAGCAGGTTCACGAGCAACCCGACCTGTCTCCTAATCTAACCACATACAACGTTCTGATTGCCGCTTACCTTACCGCTTGGATGTGGGAACGAATGGAAAACACCTACAATGGAATGATTCATGAGCATATCATGCCTGATGCTTTCACTCACCGCCTCATGCTCCGCGGCCGTGCTCATGCGGGAAGCATCGAGAAGATGGAGGAGATGCATGAAATCGTTAAGGATTCTGCAGGCAAGTGCGCTTCTCAGCTGGTTCGAGCCATGATCTGTGCCTATTGCAAGAGTTCCGATAAAAATCGGGTGAGCAAGATCGGGGAGCTTCTCAAGCTTCTTCCTGAAGATGAGTACCGGCCATGGCTGACTGTTCTTCTGATAAGGCTTTACGCTCAGGAGGGATTGCTGGATGCCATGGAGAGGCTCATCTCCGAGGCGATTCAAACGGAGGTGAAAGTAATAGCTTTAGGCATCATGCGCTCCATCATCGCGAGCTATTTTCGCCGGGATTCAATAGATCGGTTGATCAAGTTCGTCAGCCTCGCAGAGTGCGCCGGGTGGAAGCTTTGCAGATCTCTGTTTCACTGTAAAATGGTGATGCACGGGCAGAGGAATCAGATGGTGGAGATGCACGGGGCGTTGGAGGAGATGGAAAGCTTCAGGTTTGATCGCACAAAGAAGACATTTTTGATCATGTACAAGGCTTATTCGAAGGTCGGGAGGAGATGCGAAGCAAAGATTATTGTTGGGATGATGTGCAAATATGGTTTCCTCGAGCCCAAAGCAGCTTTGCTTTTCTAGCCGGCATGGAGAGTTCTGTCTGATGAAGCAATTGCTGTCTGGTGATGGCAGAAACCGCCGGGCTATATAATGCGAAAGTTTCAGTGAGCTGGGGAGTAAGTGGGAACGCCGATTTACAGTCGATTCCATCTTCACAATCCCGTGTTGAAGAGTTGATCAGCAATGCTGATTTCGTCCCCTCCCCCCCTTAAAAGCTGGTCCCAGCCTGCGGCGTCATTATCGAGCTCGCCCAATATTTTGTGAGATGCCTCCTTGTAGGTGGGGAGGGGCTAATATAGTTGTTCTCAGTTGAAGTTTAATAAGGGCTGATTATATCATTCATTTTTTAAACTATAGCCTGAGTTTTTTCTTCTTTTTTTTTTTTTTTGCTTCTCGGTAATTTTCTTAAGCACTGTTAGATATAAAGTAAATATTGTGCAAAATATTTACTGGATTATAAATTTGTTGTGTTTAGTATTCTAAATTTATAGGGTAAAATAAAGTGGGTTTAAAATATGTAATCCGGCTAATTTTCGTAAATCGCAACCTTGACTCACGGAGCCGCTCCGTCATCCACCTCCTAGCTCTTGCCGTCCTTCTCGACGGCATTCGCTTTCGCCATCGTTAGGACGGCAGGCATGCGATCGTGATTTCAGAGAGCTGGCCGCATCTTCAATGTCGAGTTTTGG

Network for GWHGAAEX012504

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13812.5	PPR_3	186	245	1.80E-09
PF13041.5	PPR_2	268	314	1.90E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.180
SRP064423	SRR2545915	Juvenile tuber	7.680
SRP108465	SRR5643513	five period of Gastrodia elata	13.520
	SRR5643514	five period of Gastrodia elata	11.810
	SRR5643515	five period of Gastrodia elata	13.030
	SRR5643524	five period of Gastrodia elata	11.470
	SRR5643525	five period of Gastrodia elata	15.020
	SRR5643528	five period of Gastrodia elata	13.280
	SRR5643658	five period of Gastrodia elata	10.320
	SRR5643659	five period of Gastrodia elata	19.010
	SRR5643660	five period of Gastrodia elata	21.970
	SRR5643661	five period of Gastrodia elata	19.650
	SRR5643662	five period of Gastrodia elata	23.480
	SRR5643663	five period of Gastrodia elata	19.270
	SRR5643664	five period of Gastrodia elata	15.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.740
SRP279888	Gastro	Gastrodia elata tuber	14.34
	Juven	Juvenile tuber	11.22
	Mother_Gastro	Mother tuber of Gastrodia elata	8.87
	Mother_Juven	Mother tuber of Juvenile	7.72