Detail information of GWHGAAEX012507/evm.TU.scaffold_44.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-165 | FOG: PPR repeat |
| nr | gi|743806462|ref|XP_010927665.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Elaeis guineensis] |
| Swissprot | tr|Q9SHZ8|PP168_ARATH | 4.00E-166 | Pentatricopeptide repeat-containing protein At2g22070 |
| trEMBL | tr|J3MJN1|J3MJN1_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G16130.1} |
| trEMBL | tr|J3MJN1|J3MJN1_ORYBR | 6.00E-18 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G16130.1} |
| TAIR | AT2G22070 | 1.00E-165 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 563814 | 566135 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012507
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 108 | 130 | 0.051 |
| PF01535.19 | PPR | 134 | 163 | 0.0034 |
| PF01535.19 | PPR | 235 | 258 | 0.0022 |
| PF01535.19 | PPR | 267 | 295 | 0.0014 |
| PF01535.19 | PPR | 339 | 359 | 0.3 |
| PF13041.5 | PPR_2 | 365 | 412 | 2.30E-09 |
| PF01535.19 | PPR | 440 | 463 | 0.038 |
| PF13041.5 | PPR_2 | 465 | 513 | 1.90E-08 |
| PF01535.19 | PPR | 542 | 560 | 0.68 |
| PF14432.5 | DYW_deaminase | 639 | 763 | 3.70E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.540 |
| SRR2545915 | Juvenile tuber | 2.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.070 |
| SRR5643514 | five period of Gastrodia elata | 2.560 | |
| SRR5643515 | five period of Gastrodia elata | 1.460 | |
| SRR5643524 | five period of Gastrodia elata | 2.110 | |
| SRR5643525 | five period of Gastrodia elata | 0.610 | |
| SRR5643528 | five period of Gastrodia elata | 0.270 | |
| SRR5643658 | five period of Gastrodia elata | 0.330 | |
| SRR5643659 | five period of Gastrodia elata | 2.130 | |
| SRR5643660 | five period of Gastrodia elata | 2.350 | |
| SRR5643661 | five period of Gastrodia elata | 1.850 | |
| SRR5643662 | five period of Gastrodia elata | 1.950 | |
| SRR5643663 | five period of Gastrodia elata | 2.000 | |
| SRR5643664 | five period of Gastrodia elata | 2.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.21 |
| Juven | Juvenile tuber | 3.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.74 | |
| Mother_Juven | Mother tuber of Juvenile | 1.62 |