Detail information of GWHGAAEX012511/evm.TU.scaffold_44.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743769137|ref|XP_010914850.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9FX35|PP117_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g73400, mitochondrial (Precursor) |
| trEMBL | tr|K3YRC7|K3YRC7_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si016821m} |
| TAIR | AT1G73400 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 633903 | 636431 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012511
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 217 | 243 | 0.0027 |
| PF01535.19 | PPR | 251 | 279 | 0.0092 |
| PF13041.5 | PPR_2 | 282 | 334 | 2.30E-11 |
| PF12854.6 | PPR_1 | 352 | 383 | 5.80E-09 |
| PF13041.5 | PPR_2 | 390 | 434 | 2.50E-12 |
| PF01535.19 | PPR | 464 | 493 | 0.38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.860 |
| SRR2545915 | Juvenile tuber | 3.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.580 |
| SRR5643514 | five period of Gastrodia elata | 3.580 | |
| SRR5643515 | five period of Gastrodia elata | 3.310 | |
| SRR5643524 | five period of Gastrodia elata | 3.840 | |
| SRR5643525 | five period of Gastrodia elata | 2.840 | |
| SRR5643528 | five period of Gastrodia elata | 1.160 | |
| SRR5643658 | five period of Gastrodia elata | 1.110 | |
| SRR5643659 | five period of Gastrodia elata | 4.600 | |
| SRR5643660 | five period of Gastrodia elata | 4.030 | |
| SRR5643661 | five period of Gastrodia elata | 5.150 | |
| SRR5643662 | five period of Gastrodia elata | 5.930 | |
| SRR5643663 | five period of Gastrodia elata | 4.510 | |
| SRR5643664 | five period of Gastrodia elata | 4.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.08 |
| Juven | Juvenile tuber | 2.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.84 | |
| Mother_Juven | Mother tuber of Juvenile | 1.91 |