Detail information of GWHGAAEX012512/evm.TU.scaffold_44.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262196624|ref|YP_003267833.1| | 2.00E-16 | RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365] |
| KOG | KOG0118 | 2.00E-42 | FOG: RRM domain |
| nr | gi|743806244|ref|XP_010927629.1| | 8.92E-51 | PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9LIS2|RBG4_ARATH | 4.00E-23 | Glycine-rich RNA-binding protein 4, mitochondrial (Precursor) |
| trEMBL | tr|K7L326|K7L326_SOYBN | 1.00E-48 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G33790.3} |
| TAIR | AT3G08000 | 2.00E-42 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 639322 | 646334 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012512
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 52 | 79 | 0.0001 |
| PF00076.21 | RRM_1 | 93 | 136 | 7.80E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.550 |
| SRR2545915 | Juvenile tuber | 28.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.510 |
| SRR5643514 | five period of Gastrodia elata | 8.200 | |
| SRR5643515 | five period of Gastrodia elata | 9.520 | |
| SRR5643524 | five period of Gastrodia elata | 8.710 | |
| SRR5643525 | five period of Gastrodia elata | 4.950 | |
| SRR5643528 | five period of Gastrodia elata | 4.830 | |
| SRR5643658 | five period of Gastrodia elata | 5.870 | |
| SRR5643659 | five period of Gastrodia elata | 14.360 | |
| SRR5643660 | five period of Gastrodia elata | 13.790 | |
| SRR5643661 | five period of Gastrodia elata | 12.730 | |
| SRR5643662 | five period of Gastrodia elata | 10.970 | |
| SRR5643663 | five period of Gastrodia elata | 12.660 | |
| SRR5643664 | five period of Gastrodia elata | 14.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.74 |
| Juven | Juvenile tuber | 15.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.61 | |
| Mother_Juven | Mother tuber of Juvenile | 10.06 |