Gene detail

Detail information of GWHGAAEX012515/evm.TU.scaffold_44.45

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434406348\|ref\|YP_007149233.1\|	1.00E-147	TIGR03032 family protein [Cylindrospermum stagnale PCC 7417]
KOG	KOG4626	0	O-linked N-acetylglucosamine transferase OGT
nr	gi\|672199042\|ref\|XP_008777511.1\|	0	PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9M8Y0\|SEC_ARATH	0	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
trEMBL	tr\|M0SFE4\|M0SFE4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P17280_001}
TAIR	AT3G04240	0	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	711829	725106	-

Transcript Sequence
>GWHTAAEX012515 AGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAATCCATTCCTTCCACCGTCTTCAGCGTCTTCTCGATCCCTCTTCAAATTTGCCCATCGAAGGCGACTCTGTCCCGCAGATACTACAGAATAATGCTTTCACTGCAGATAGACACGCGGCAGCCGGCGTCGGGAAAGGTCACCCATGTTCTGGGGTCGAGTTCCGGCGCATCCGGATCTTCCACCCTAGGATTTACCCGCGGCATCTTCGGCAGCGGTGCCGATCGATCGGAGGATCTTGCGCTAACGCTTCAGCCGATCGACTTGTATAGCGACATCAAGCCTCTGCAACTCGTGAAGCAGCTGGATGTTGATGATGACATGCACCTGGTGCTTGCCCATCAGAATTACAAAGCTGGGAAATTTAAGCAGGCGCTGGAGCACTGCAGCATGATATACGAGAAGCACCCGCAGCGCACGGACATTCTCCTGCTGCTTGGTGCTATTTATTACCAGTTACATGATTATGATATGTGCATTACAAGGAATGAGGAAGCCCTTGCTATTGACCCACATTTTCCTGAATGCTATGGTAACATGGCAAATGCTTGGAAGGAAAAAGGCAATATTGATCTCGCCATACATTATTACCAGGTCGCTCTTGAGTTACGACCAAACTTCTCTGATGCTTGGTCAAATTTAGCAAGTGCTTATATACGGAAGGGGAGGCTTCATGAGGCAGCTCAGTGTTGTCGCCAAGCTCTTTCATTGAATCCTCGACTGGTTGATGCTCATTGCAACCTTGGGAATCTCATGAAAGCACAAGGTTTGATTCAGGAGGCATATAATTGCTATCTAGAGGCATTGCGTATACAACCTAGTTTTGCTGTTGCTTGGTCAAATCTTGCTGGGATTTTTATGGATGCTGGAGATCTTCACAGAGCCCTTCTATATTACAAGGAAGCTATTAAATTGAAACCAACACTTGGTGATGCCTATCTCAATCAAGGAAACATTTATAAGGCTTTGGGAATGCCACATGAGGCTATTATGTGCTATCAACGAGCTCTACAATCACGTCCAAATTACTCAATGGCATATGGTAACCTTGCTAGTACATATTATGAACAAGGTCAGCTGGATTTGGCTATTCTTCACTACAAGCAAGCCATTGCATCTGATTCAGGATTTGTGGAGGCATATAATAATCTGGGCAATGCTTTGAAAGATGTTGGCAGAGTGGATGAAGCAATGAATTACTATAGGTCTTGTCTTGCTTTGCAACCTAACCACCCACAGGCTCTTACAAACCTTGGAAATATATATATGGAATGGAATATACTCAATGCTGCTGCTACTTTATACAAAGCAACCTTATCCGTGACTACAGGATTATCTGCTCCTTTCAGCAACCTTGCAGTAATATATAAACAACAGGGAAACTTTAGTGATGCTATAGCGTGCTATAATGAGGTTCTCCGTATAGATCCTATGGCTGCTGATGGCCTTGTCAATAGGGGGAACACTTTTAAGGAGATTGGAAGGGTCAGTGAAGCAATTCAAGATTATGCACGAGCCGTTTCTATTAAACCAACTATGGCTGAAGCTCATGCAAACTTGGCTTCTGCATACAAAGATAGTGGACATGTAGATCTTGCAATAACTTGTTACAGGCAAGCATTACTTCTCCGTTCGGACTTTCCTGAGGCCACATGCAATCTCTTGCACACATTACAGTGCGTCTGTGACTGGGATGATCGGGATGCCAAGTTTGTTGAAGTGGAGGGAATCATTAAGAGACAGATCAAGATGGGAATGCTTCCAAGTGTCCAACCATTTCATGCTATTGCCTATCCCATTGATCCTACCCTTGCATTAGAAATAAGCCAAAAGTATGCAGCGCAGTGCTTATTGATTGCTTCACGTTTTGGACTTTCGCCATTTACTTATCCTGCACCTGCACCTGTGAAGTCAAAAGGGGGAACTGGACGTCTCAGATTGGGATATGTCAGCAGTGACTTTGGTAACCACCCTCTGTCTCATCTCATGGGCTCTGTGTTTGGAATGCATAACCGGGAGAATGTTGAGGTTTTCTGCTACGCTTTGAGTCAAAATGATGGCACTGAATGGAGGCAACGGATTATGGCTGAAGCAGAACATTTTATTGATGTTTCTCCCATGACTTCTGATGTAATTGCAAGAATGATCAATGAGGACAAGATTCAGATCCTAGTAAACCTTAATGGCTATACTAAGGGTGCAAGAAACGAAATATTTGCTATGCAACCTGCACCCATACAGGTTTCATACATGGGGTTCCCTGGGACAACAGGTGCAACTTACATCGACTACCTCGTTACCGATGAGTTTGTTTCTCCCACATGGTTTTCACATATATACTCAGAGAAACTAGTTCACCTCCCTCATTGTTACTTCGTTAATGATTATAAGCAGAAAAACCGGGATGTCCTCGAACCCATGTGTCGCCACAAGCGGTCAGACTATGGCTTACCTGAAGATAAATTTCTTTTTGCTTGTTTTAATCAACTGTACAAAATGGATCCTGAAATATTCGATACATGGTGTAGCATTTTGAAACGAGTCCCTGATAGTGCGCTGTGGCTGCTTAGATTTCCTGCAGCCGGTGAAAAGAGATTGCTTGAATATGCTGAGAAACATGGAGTCGCAAAAGATCAGATCATATTCACAGATGTTGCCATGAAAAATGAGCACATCCGGCGGAGCTCGCTGGCCGACCTTTTTCTCGACACGCCTCTATGCAATGCTCATACTACCGGCACTGATGTGTTGTGGGCCGGCCTTCCCATGGTGACTCTTCCGCTGGAAAAAATGGCCACTAGGGTTGCTGGTTCACTATGCCTTGCCACCGGCGTTGGAGAAGAGATGATTGTCAGAAGCATGAAAGAGTACGAGGAGAGGGCTGTGCATTTGGCTTTGAACCCAGTGAAGCTCTTGGCGCTGAGAAATAAGCTCAAGGCGGTGCGGTTTGGTTGCCCGTTATTCGACACCGCAAGATGGGTGAGGAATCTGGAGAGGTCGTTCTTCAGGATGTGGAATCTGCATTGCTCAGGTAATCAGCCGCAGCACTTCAAGGTTTTGGAAAACGATGAGGAGTTTCCATATGACCGTTAGGTTTTGAAAGAGCAAGGTGGGGGCTTTGTAAATAGCTTAAAAGTTTTTTTTTTTTAATTATTATTATTATTAACATAGTAGAAAATAGAGAAAAAATCTTAAATGTGATTCGTGGGTGTTGTGAAATAACCATGAAATGGCTTGTGGTTTATTTTCTTGAAATATTTTTGGGGGTTTACATTGTAGATTTCTATTTATATGATTATTAACTTGTCTATGTAATGCTGGACTTGAAAAAATATTTATTTATGAGCTTGCTACTTGTCTCCCTTTGATGCCCAACACAATTAATGCATTTAAACTTGGTGCTAA

Network for GWHGAAEX012515

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13176.5	TPR_7	145	175	0.0083
PF00515.27	TPR_1	178	209	4.30E-08
PF13181.5	TPR_8	212	243	0.046
PF13181.5	TPR_8	247	277	0.0027
PF13424.5	TPR_12	280	341	1.10E-09
PF00515.27	TPR_1	347	380	2.00E-07
PF13414.5	TPR_11	424	463	2.40E-08
PF13176.5	TPR_7	485	518	5.80E-05
PF13844.5	Glyco_transf_41	614	768	1.00E-71
PF13844.5	Glyco_transf_41	776	974	1.10E-71

Protein Sequence

>GWHPAAEX012515
MLSLQIDTRQPASGKVTHVLGSSSGASGSSTLGFTRGIFGSGADRSEDLALTLQPIDLYSDIKPLQLVKQLDVDDDMHLVLAHQNYKAGKFKQALEHCSMIYEKHPQRTDILLLLGAIYYQLHDYDMCITRNEEALAIDPHFPECYGNMANAWKEKGNIDLAIHYYQVALELRPNFSDAWSNLASAYIRKGRLHEAAQCCRQALSLNPRLVDAHCNLGNLMKAQGLIQEAYNCYLEALRIQPSFAVAWSNLAGIFMDAGDLHRALLYYKEAIKLKPTLGDAYLNQGNIYKALGMPHEAIMCYQRALQSRPNYSMAYGNLASTYYEQGQLDLAILHYKQAIASDSGFVEAYNNLGNALKDVGRVDEAMNYYRSCLALQPNHPQALTNLGNIYMEWNILNAAATLYKATLSVTTGLSAPFSNLAVIYKQQGNFSDAIACYNEVLRIDPMAADGLVNRGNTFKEIGRVSEAIQDYARAVSIKPTMAEAHANLASAYKDSGHVDLAITCYRQALLLRSDFPEATCNLLHTLQCVCDWDDRDAKFVEVEGIIKRQIKMGMLPSVQPFHAIAYPIDPTLALEISQKYAAQCLLIASRFGLSPFTYPAPAPVKSKGGTGRLRLGYVSSDFGNHPLSHLMGSVFGMHNRENVEVFCYALSQNDGTEWRQRIMAEAEHFIDVSPMTSDVIARMINEDKIQILVNLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPTWFSHIYSEKLVHLPHCYFVNDYKQKNRDVLEPMCRHKRSDYGLPEDKFLFACFNQLYKMDPEIFDTWCSILKRVPDSALWLLRFPAAGEKRLLEYAEKHGVAKDQIIFTDVAMKNEHIRRSSLADLFLDTPLCNAHTTGTDVLWAGLPMVTLPLEKMATRVAGSLCLATGVGEEMIVRSMKEYEERAVHLALNPVKLLALRNKLKAVRFGCPLFDTARWVRNLERSFFRMWNLHCSGNQPQHFKVLENDEEFPYDR

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT41

KEGG pathway

KO	Enzyme	pathway	mapID
K09667	OGT	Other types of O-glycan biosynthesis	map00514

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	88.170
SRP064423	SRR2545915	Juvenile tuber	105.140
SRP108465	SRR5643513	five period of Gastrodia elata	65.290
	SRR5643514	five period of Gastrodia elata	68.190
	SRR5643515	five period of Gastrodia elata	61.470
	SRR5643524	five period of Gastrodia elata	59.790
	SRR5643525	five period of Gastrodia elata	93.130
	SRR5643528	five period of Gastrodia elata	84.730
	SRR5643658	five period of Gastrodia elata	115.670
	SRR5643659	five period of Gastrodia elata	74.110
	SRR5643660	five period of Gastrodia elata	82.720
	SRR5643661	five period of Gastrodia elata	78.400
	SRR5643662	five period of Gastrodia elata	83.310
	SRR5643663	five period of Gastrodia elata	90.400
	SRR5643664	five period of Gastrodia elata	98.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	63.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	63.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	61.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.560
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	70.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	62.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	63.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	63.860
SRP279888	Gastro	Gastrodia elata tuber	93.62
	Juven	Juvenile tuber	78.30
	Mother_Gastro	Mother tuber of Gastrodia elata	117.15
	Mother_Juven	Mother tuber of Juvenile	103.40