Gene detail

Detail information of GWHGAAEX012517/evm.TU.scaffold_44.49

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|313672810\|ref\|YP_004050921.1\|	3.00E-20	wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
KOG	KOG0265	4.00E-100	U5 snRNP-specific protein-like factor and related proteins
nr	gi\|672134998\|ref\|XP_008791157.1\|	3.41E-109	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Phoenix dactylifera]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	3.00E-16	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A068URY2\|A0A068URY2_COFCA	3.00E-108	Coffea canephora
TAIR	AT2G43770	4.00E-100	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	760696	762118	-

Transcript Sequence
>GWHTAAEX012517 ACCCCTCCTTCTTCTCCGAAAGGCCGCCAACCACCTCCTCCACCTCCTTATTTCGCTAGCAACCCCTTGCCTTCATCTCACTCCCCCCTCGCCAACGCCAAAGCCTCCCCATCTTCTTCCAATCTTCTTCTCATTCCCCGGCCAACAACTACCCCTGCCCCTCCACCTCGCCATGCCAATACCTTGCCAAAATCCTCCCAAGTCATCCTCCACCTCCTCGGCAAGTCACCGCCTCCCCACGGCAAATCCCCTTTGTTTAATCAAAGAACTATATTGCTGGCAAGCATCGAACTCTAGCCTAGAATCACCCATTATGCTCTTAACTGGACATCAGAGTGCCATTTACACGTTGAACTTCAACCCAGTTGGGACTATTGTCGCCTCAGGTTCCCATGACAAAGGCATCTTTTTATGGCACGTACATGGCGATTGCAAGAAGTTCATGGTCCTGCATGGTCACAAAAATGCTGTGCTTGATGTTCAATGAACTTCTGATGGGTCTCAAATAATCTCTGCAAGCCCTGACAAGACTCTTTGAGCTTGGGATGTTGAAACTGGACAACAGGTAAAGAAGATGGTAGAACACTCCTCGTCTGTTAACTCCTGCTGTCTAGCTCATCGAGGACCACCACTGGTTGTCAGCGGGTCAGATGATGGCACAGCGAAGTTATGGGATCTCCGGCAGCGTGGAGCTGTGCAAATCTTCCCATATAAGTACCAGATCACTGCAGTTAGCTTTTCTGATGCATCTGACAAGATCTTCTCTGGTGGGCTTGACAATGATGCAAAGGTGCGGGATTTGCGGAGAAATGAGGTTACCATGACTCTCCAAGGACACGGTGACATGATCACTGGCATGCAATTGAGCCGTGATGGCTCCTATCTATTAACAAACGGAATGGATTGTACTCCGAGGATATGGGATATGAGGCCATATGCACCCCAAAATAGACGTGTTAAGATATTTTCTGGGCATCAACACAACTTTGAGAAGAACCTTCTCAAGTGTGCGTGGTCACCGGATGGGAGCAAGGTTACTTCTGGGAGCTCTGATCGAATGGTGTACATCTGGGACACCACATCAAGGAGGATCCTGTACATAATGGGTCAGTGAATGAAACTGATTTCCACCCCACTGAGCCTATTATTGGCTCCTGCAGCAGTGACAAGCAGATTTATTGGGGGGAGATTTGGATAAGATATTACCATCAAATTGCAATATAACTCTTATATTGTAATTTTTTATTCCAAACTTTTGGAGGTAACTTTGAGAGTATATTTCCTTGAAGCTCTGATATTAAGAGTTTGTTATTTGTAGCAATCGTACTTGCCATTGTCTGATCATTTGCCTTATATGTGCTTTCATCTTTTTACTTGAAAATTGTTCAAGTAGCTCATGTTTTTAGTTATGCTTACTGCAATA

Network for GWHGAAEX012517

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	4	34	0.00016
PF00400.31	WD40	82	117	3.80E-05
PF00400.31	WD40	128	167	1.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12857	SNRNP40, PRP8BP	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.220
SRP064423	SRR2545915	Juvenile tuber	0.060
SRP108465	SRR5643513	five period of Gastrodia elata	1.220
	SRR5643514	five period of Gastrodia elata	0.170
	SRR5643515	five period of Gastrodia elata	0.710
	SRR5643524	five period of Gastrodia elata	0.100
	SRR5643525	five period of Gastrodia elata	0.280
	SRR5643528	five period of Gastrodia elata	0.290
	SRR5643658	five period of Gastrodia elata	0.400
	SRR5643659	five period of Gastrodia elata	0.100
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	1.040
	SRR5643663	five period of Gastrodia elata	0.240
	SRR5643664	five period of Gastrodia elata	11.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.230
SRP279888	Gastro	Gastrodia elata tuber	0.71
	Juven	Juvenile tuber	0.06
	Mother_Gastro	Mother tuber of Gastrodia elata	1.58
	Mother_Juven	Mother tuber of Juvenile	0.51