Detail information of GWHGAAEX012518/evm.TU.scaffold_44.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|46447632|ref|YP_008997.1|2.00E-7323S rRNA (Uracil-5-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25]
nrgi|743802760|ref|XP_010926714.1|0PREDICTED: uncharacterized protein LOC105048923 isoform X1 [Elaeis guineensis]
trEMBLtr|W1PJ39|W1PJ39_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN10007.1}
TAIRAT3G271808.00E-151S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000045765204805082+
Transcript Sequence

Network for GWHGAAEX012518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03602.14Cons_hypoth953094085.30E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006396Biological ProcessRNA processing
GO:0008173Molecular FunctionRNA methyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.390
SRR2545915Juvenile tuber4.020
SRP108465SRR5643513five period of Gastrodia elata7.730
SRR5643514five period of Gastrodia elata8.350
SRR5643515five period of Gastrodia elata6.700
SRR5643524five period of Gastrodia elata6.800
SRR5643525five period of Gastrodia elata4.130
SRR5643528five period of Gastrodia elata4.420
SRR5643658five period of Gastrodia elata5.520
SRR5643659five period of Gastrodia elata9.640
SRR5643660five period of Gastrodia elata11.980
SRR5643661five period of Gastrodia elata8.530
SRR5643662five period of Gastrodia elata10.880
SRR5643663five period of Gastrodia elata12.640
SRR5643664five period of Gastrodia elata14.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.210
SRR6049655Rhizomagastrodiae_C368-T10_good_113.390
SRR6049656Rhizomagastrodiae_C368-T07_good_115.250
SRR6049657Rhizomagastrodiae_C368-T07_good_123.930
SRR6049658Rhizomagastrodiae_C368-T04_good_137.730
SRR6049659Rhizomagastrodiae_C368-T04_good_145.250
SRR6049660Rhizomagastrodiae_C368-T01_good_128.450
SRR6049661Rhizomagastrodiae_C368-T04_good_131.580
SRR6049662Rhizomagastrodiae_C368-T01_good_115.170
SRR6049663Rhizomagastrodiae_C368-T01_good_118.520
SRR6049664Rhizomagastrodiae_C368-T10_good_110.710
SRR6049665Rhizomagastrodiae_C368-T10_good_110.710
SRP279888GastroGastrodia elata tuber 21.59
JuvenJuvenile tuber12.25
Mother_GastroMother tuber of Gastrodia elata 10.78
Mother_JuvenMother tuber of Juvenile 10.07