Detail information of GWHGAAEX012519/evm.TU.scaffold_44.51


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-107FOG: PPR repeat
nrgi|743820459|ref|XP_010931785.1|2.90E-174PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Elaeis guineensis]
Swissprottr|A8MQA3|PP330_ARATH2.00E-108Pentatricopeptide repeat-containing protein At4g21065
trEMBLtr|M0TNC9|M0TNC9_MUSAM2.00E-155Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P07260_001}
TAIRAT4G21070_11.00E-107Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000045806145808499+
Transcript Sequence

Network for GWHGAAEX012519

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR2242517.40E-05
PF01535.19PPR2993250.00021
PF01535.19PPR3283570.00094
PF01535.19PPR3663890.14
PF01535.19PPR4004240.42
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.770
SRR2545915Juvenile tuber0.830
SRP108465SRR5643513five period of Gastrodia elata1.280
SRR5643514five period of Gastrodia elata1.600
SRR5643515five period of Gastrodia elata1.130
SRR5643524five period of Gastrodia elata1.690
SRR5643525five period of Gastrodia elata0.690
SRR5643528five period of Gastrodia elata0.420
SRR5643658five period of Gastrodia elata0.160
SRR5643659five period of Gastrodia elata2.400
SRR5643660five period of Gastrodia elata1.690
SRR5643661five period of Gastrodia elata2.320
SRR5643662five period of Gastrodia elata2.050
SRR5643663five period of Gastrodia elata1.650
SRR5643664five period of Gastrodia elata1.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.710
SRR6049655Rhizomagastrodiae_C368-T10_good_12.020
SRR6049656Rhizomagastrodiae_C368-T07_good_12.530
SRR6049657Rhizomagastrodiae_C368-T07_good_11.740
SRR6049658Rhizomagastrodiae_C368-T04_good_11.600
SRR6049659Rhizomagastrodiae_C368-T04_good_10.770
SRR6049660Rhizomagastrodiae_C368-T01_good_11.310
SRR6049661Rhizomagastrodiae_C368-T04_good_11.190
SRR6049662Rhizomagastrodiae_C368-T01_good_12.630
SRR6049663Rhizomagastrodiae_C368-T01_good_13.430
SRR6049664Rhizomagastrodiae_C368-T10_good_12.470
SRR6049665Rhizomagastrodiae_C368-T10_good_12.470
SRP279888GastroGastrodia elata tuber 1.40
JuvenJuvenile tuber0.66
Mother_GastroMother tuber of Gastrodia elata 0.54
Mother_JuvenMother tuber of Juvenile 0.34