Detail information of GWHGAAEX012520/evm.TU.scaffold_44.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0446 | 0 | Vacuolar sorting protein VPS1, dynamin, and related proteins |
| nr | gi|672141483|ref|XP_008794571.1| | 0 | PREDICTED: dynamin-related protein 3A-like [Phoenix dactylifera] |
| Swissprot | tr|Q8S944|DRP3A_ARATH | 0 | Dynamin-related protein 3A |
| trEMBL | tr|A0A061E0U7|A0A061E0U7_THECC | 0 | Dynamin-related protein 3A isoform 1 {ECO:0000313|EMBL:EOX98644.1} |
| TAIR | AT4G33650 | 0 | dynamin-related protein 3A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 822728 | 857467 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012520
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00350.22 | Dynamin_N | 53 | 235 | 2.00E-53 |
| PF01031.19 | Dynamin_M | 245 | 529 | 3.00E-102 |
| PF02212.17 | GED | 667 | 756 | 1.50E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17065 | DNM1L | TNF signaling pathway | map04668 |
| Mitophagy - yeast | map04139 | ||
| Apoptosis - fly | map04214 | ||
| Necroptosis | map04217 | ||
| NOD-like receptor signaling pathway | map04621 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.820 |
| SRR2545915 | Juvenile tuber | 32.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.850 |
| SRR5643514 | five period of Gastrodia elata | 41.170 | |
| SRR5643515 | five period of Gastrodia elata | 43.880 | |
| SRR5643524 | five period of Gastrodia elata | 39.270 | |
| SRR5643525 | five period of Gastrodia elata | 31.670 | |
| SRR5643528 | five period of Gastrodia elata | 30.670 | |
| SRR5643658 | five period of Gastrodia elata | 30.440 | |
| SRR5643659 | five period of Gastrodia elata | 42.640 | |
| SRR5643660 | five period of Gastrodia elata | 38.630 | |
| SRR5643661 | five period of Gastrodia elata | 39.720 | |
| SRR5643662 | five period of Gastrodia elata | 46.310 | |
| SRR5643663 | five period of Gastrodia elata | 40.490 | |
| SRR5643664 | five period of Gastrodia elata | 41.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.52 |
| Juven | Juvenile tuber | 74.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 60.66 | |
| Mother_Juven | Mother tuber of Juvenile | 76.81 |