Gene detail

Detail information of GWHGAAEX012530/evm.TU.scaffold_44.63

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672138382\|ref\|XP_008792945.1\|	3.31E-80	PREDICTED: transcription factor bHLH62-like [Phoenix dactylifera]
Swissprot	tr\|Q9FJL4\|BH078_ARATH	1.00E-54	Transcription factor bHLH78
trEMBL	tr\|M0TAS3\|M0TAS3_MUSAM	1.00E-66	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P27780_001}
TAIR	AT5G48560	5.00E-54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	1025763	1028308	-

Transcript Sequence
>GWHTAAEX012530 GGCATAAAAAACTCTTTGAAATATTAATTATTTAGACATCATAGTGTTTCTACTTTAATCACTTGTCAACAAAAAAAAAATCACTATTAAACCAAAACCACCCTCACATGGCCACCACATATCTTCCAAAAAATTATCACAGCTCTCTTTCTCTTCTATAGAACCTTGAGATAGTAGCAGAGGGAGACCAATCCCCCTCTATTTCCTATTACAAAACTAAAAGGGTCAACCATTTCCCCTCTTCAAAGTTCTTCCCCCTTTTACCTCTTTTTTCCACCCATTCCTCCTCCAAAGGTCCCTCCTTTCCTCCTTCCTGCTTAAAATCGCCATCAAAGGAGAAGCTTTTATCTCCCCTGAGATGAATTACGGGCCGCCTTCTCAGGATCAGCCTAACCTCAACTGGGATCAGCCATTGAATCTTTTCAGCACTGATTTTCCCTCTCAGGAAACTGCTGAGATCCCCTGCTTCACAAATGACACTCTTAGTTCTATGCATGCCAACCGTTTGCTGCCTTTTCCTGCCTTTAGTTCTGACAGCTATGCAGCAATTGCCGGCCAATTTTGTCTCTCTGAGCCTGGAAGGCTTTCTAGGGTTTCAAGCAGTAAGGCTCTTAAAGCTGATGAGAGCCCAATTCAGTCAGAGATTGGAGATGGGGATTCCTCGGTGACTAATATAGCTTCTGTTTCTGGAGATAGATTTATGAAGAAGAGAAAGGCAGCGCCCAAGAGCAAAGCAAAGGTAGAAGAGGAAAATGATCTGAATTCAAAGAAATGCCGGTCATTTGAAGATTCTGGAAATGATGATGGCGGCGTTAGGCCTAAGGAAGATCAGATTCAGAATGGTGATAAGAAGAATAGAAAGGTTAATGGCTCGAACGCCATTGAACCTCCCACAGGCTACATCCATGTCAGGGCGAGAAGAGGGCAAGCCACAGATAGCCATAGCCTTGCTGAGAGAGTTAGAAGAGAAAAAATCAGCCAGAGAATGAAACTGCTTCAAGATCTTGTGCCGGGTTGCAACAAGATAACTGGCAAAGCTCTAATGCTCGATGAAATCATAAACTATGTGCAGTCATTGCAACGGCAAGTTGAGTTCCTCTCGATGAAGCTAGCCACGGTGAACCCCCAGCTTGATTTTAGCTTTGAAGATTTCATCAAAAAGGAGGTTCCTTTGGCTTCTGCTTTTCCTTTGGCTCACCAATCTAAGGATGGAAACCACCCTTTTCCGCTTAATTTGGCAAGTGCAATTGATCCCAATTGTCCCATCAGTCAATATGAGCCCTTCCTTTATCAATCGTCAAGCATACAAACATCTCTTGATATGTTTATAGGCTCAAATTCTCAGGCGGGGAATCTCTTAGATGATGTGCTTCAAGCAAGCTTTATGCAGAACCAGGAGATTGGAATGAGGTCCCAAAGCTTTCATGGACAATTGCCAGCAACACACATGAAGATAGAGTTCTAATTATGTTGATCTCCATTCAAGCTGCAAGGATCCCTTGTATATAAGAGAATTCTGCATGGTGTTAGCATAATATGGTTTGAACTAACAATCTACTGGTCACAATAGCTTCCTTCTAATTTCTTTTTATTTATTTATTTCTTTGGGCTATTGATTGTTGTGCAGCAGTTGTGATGCTGGCATCCTGTGGTGCTATTTATGTGTCAACACCACATGAAATATGTAATTTGAATAACATTGCATCCACTTTGTTGTATTAAACTTGACAATTCCAGCATCAATTTATTGAGTATTTTCTGCTTCCTACTTGC

Network for GWHGAAEX012530

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.25	HLH	194	241	2.90E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.700
SRP064423	SRR2545915	Juvenile tuber	23.840
SRP108465	SRR5643513	five period of Gastrodia elata	19.820
	SRR5643514	five period of Gastrodia elata	23.930
	SRR5643515	five period of Gastrodia elata	20.840
	SRR5643524	five period of Gastrodia elata	15.820
	SRR5643525	five period of Gastrodia elata	15.810
	SRR5643528	five period of Gastrodia elata	14.620
	SRR5643658	five period of Gastrodia elata	15.880
	SRR5643659	five period of Gastrodia elata	21.880
	SRR5643660	five period of Gastrodia elata	16.170
	SRR5643661	five period of Gastrodia elata	14.540
	SRR5643662	five period of Gastrodia elata	15.540
	SRR5643663	five period of Gastrodia elata	16.870
	SRR5643664	five period of Gastrodia elata	12.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.300
SRP279888	Gastro	Gastrodia elata tuber	13.72
	Juven	Juvenile tuber	41.01
	Mother_Gastro	Mother tuber of Gastrodia elata	25.03
	Mother_Juven	Mother tuber of Juvenile	22.51