Detail information of GWHGAAEX012532/evm.TU.scaffold_44.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695076370|ref|XP_009385472.1| | 0 | PREDICTED: probable glucan endo-1,3-beta-glucosidase A6 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q06915|EA6_ARATH | 1.00E-143 | Probable glucan endo-1,3-beta-glucosidase A6 (Precursor) |
| trEMBL | tr|A0A061DUY3|A0A061DUY3_THECC | 0 | O-Glycosyl hydrolases family 17 protein isoform 1 {ECO:0000313|EMBL:EOX93808.1} |
| TAIR | AT3G07320 | 7.00E-164 | O-Glycosyl hydrolases family 17 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 1064555 | 1066318 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012532
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00332.17 | Glyco_hydro_17 | 31 | 354 | 4.70E-86 |
| PF07983.12 | X8 | 380 | 453 | 3.40E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
| Carbohydrate-Active enzymes Family | GH17 |
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.380 |
| SRR2545915 | Juvenile tuber | 0.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.100 |
| SRR5643514 | five period of Gastrodia elata | 30.790 | |
| SRR5643515 | five period of Gastrodia elata | 24.920 | |
| SRR5643524 | five period of Gastrodia elata | 24.960 | |
| SRR5643525 | five period of Gastrodia elata | 1.760 | |
| SRR5643528 | five period of Gastrodia elata | 3.140 | |
| SRR5643658 | five period of Gastrodia elata | 2.320 | |
| SRR5643659 | five period of Gastrodia elata | 4.480 | |
| SRR5643660 | five period of Gastrodia elata | 2.060 | |
| SRR5643661 | five period of Gastrodia elata | 4.790 | |
| SRR5643662 | five period of Gastrodia elata | 4.080 | |
| SRR5643663 | five period of Gastrodia elata | 9.780 | |
| SRR5643664 | five period of Gastrodia elata | 1.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 77.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 138.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 74.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 62.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 62.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 109.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 84.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 171.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 171.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.70 |
| Juven | Juvenile tuber | 1.24 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.37 | |
| Mother_Juven | Mother tuber of Juvenile | 8.58 |