Detail information of GWHGAAEX012533/evm.TU.scaffold_44.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|319952435|ref|YP_004163702.1| | 3.00E-12 | hypothetical protein [Cellulophaga algicola DSM 14237] |
| nr | gi|672117068|ref|XP_008781714.1| | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RLK [Phoenix dactylifera] |
| Swissprot | tr|C0LGR9|Y4312_ARATH | 5.00E-179 | Probable LRR receptor-like serine/threonine-protein kinase At4g31250 (Precursor) |
| trEMBL | tr|M0SIE2|M0SIE2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P27760_001} |
| TAIR | AT3G20190 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 1078097 | 1082380 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012533
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 25 | 64 | 1.20E-08 |
| PF00069.24 | Pkinase | 322 | 518 | 1.70E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.160 |
| SRR2545915 | Juvenile tuber | 0.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.710 |
| SRR5643514 | five period of Gastrodia elata | 1.200 | |
| SRR5643515 | five period of Gastrodia elata | 2.480 | |
| SRR5643524 | five period of Gastrodia elata | 1.170 | |
| SRR5643525 | five period of Gastrodia elata | 0.640 | |
| SRR5643528 | five period of Gastrodia elata | 0.540 | |
| SRR5643658 | five period of Gastrodia elata | 0.230 | |
| SRR5643659 | five period of Gastrodia elata | 3.690 | |
| SRR5643660 | five period of Gastrodia elata | 2.580 | |
| SRR5643661 | five period of Gastrodia elata | 3.730 | |
| SRR5643662 | five period of Gastrodia elata | 2.330 | |
| SRR5643663 | five period of Gastrodia elata | 2.320 | |
| SRR5643664 | five period of Gastrodia elata | 5.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.610 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.88 |
| Juven | Juvenile tuber | 0.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.30 | |
| Mother_Juven | Mother tuber of Juvenile | 13.04 |