Detail information of GWHGAAEX012547/evm.TU.scaffold_44.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336179324|ref|YP_004584699.1| | 1.00E-07 | NB-ARC domain-containing protein [Frankia symbiont of Datisca glomerata] |
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743806913|ref|XP_010927879.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Elaeis guineensis] |
| Swissprot | tr|Q9SY69|PPR29_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g10270 |
| trEMBL | tr|M0RH35|M0RH35_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P10590_001} |
| TAIR | AT1G10270 | 0 | glutamine-rich protein 23 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 1432450 | 1434634 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012547
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 126 | 149 | 0.53 |
| PF12854.6 | PPR_1 | 157 | 185 | 9.00E-08 |
| PF01535.19 | PPR | 198 | 227 | 0.0052 |
| PF01535.19 | PPR | 234 | 261 | 1.20E-05 |
| PF01535.19 | PPR | 304 | 330 | 0.12 |
| PF01535.19 | PPR | 344 | 367 | 0.0023 |
| PF13041.5 | PPR_2 | 376 | 422 | 1.90E-11 |
| PF13041.5 | PPR_2 | 458 | 497 | 8.90E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.410 |
| SRR2545915 | Juvenile tuber | 10.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.330 |
| SRR5643514 | five period of Gastrodia elata | 18.170 | |
| SRR5643515 | five period of Gastrodia elata | 17.400 | |
| SRR5643524 | five period of Gastrodia elata | 17.700 | |
| SRR5643525 | five period of Gastrodia elata | 19.040 | |
| SRR5643528 | five period of Gastrodia elata | 18.740 | |
| SRR5643658 | five period of Gastrodia elata | 8.850 | |
| SRR5643659 | five period of Gastrodia elata | 38.920 | |
| SRR5643660 | five period of Gastrodia elata | 39.010 | |
| SRR5643661 | five period of Gastrodia elata | 37.860 | |
| SRR5643662 | five period of Gastrodia elata | 38.630 | |
| SRR5643663 | five period of Gastrodia elata | 37.780 | |
| SRR5643664 | five period of Gastrodia elata | 29.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.93 |
| Juven | Juvenile tuber | 24.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.80 | |
| Mother_Juven | Mother tuber of Juvenile | 27.91 |