Gene detail

Detail information of GWHGAAEX012549/evm.TU.scaffold_44.83

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743805020\|ref\|XP_010927333.1\|	PREDICTED: uncharacterized protein LOC105049406 [Elaeis guineensis]
trEMBL	tr\|M5X3K8\|M5X3K8_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16108.1}
TAIR	AT4G12750	Homeodomain-like transcriptional regulator

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	1488166	1520531	+

Transcript Sequence
>GWHTAAEX012549 GGCAAACCTAATGAAATGGAAAATGTTCAAACCGACCGGCCCTCATTTGGACCGTTCGACGTTAAACCGGATTCCTCACTCTCTCTCTTCCGCACAAAACCCTAAACCCTTACGAAAACAACGTAGCCGAACCATTTCTTTATAGCCCGTATAAGAAACAAGCTGCGCGCGCTTCTGTCCGGTCTCCGCTCGCCATCGTTTGGATGAGTTTCTTCCTTAAATAAACTCAGATTCAAGTTCACAGAAACCGTAGTATTCGGATAATTGCTTTAGAGATGACGGATGATGGAGTTTGTTTGATTGCGTGTCAGAGAAAGCCGCCGGAGCAAGTATTCTATAGATGAACTCAACATTCATTTGAGATTTCAGGAATGGGTTTGAGAGGTGTTTCGGTACTTCCCCTGCAATTGATTGTGAGCTTTATCCGGTAAAAGAATGAACTTCAGATGACGAGAAGTAAGAAGTATAAGAGAAGCTCGACGACGAACGGTCCAATGGAATCTCTGACTTCAAATAGTAGGCACAGGAAGAAGGGTTGCAATGAACTGGGTTGCAGAGGAAAGAAGCCTCTACTTGGGATTCAGTCCTTTCTTTCAAAGGAATACATTCTTAGTAGAGTTTTCCGGAAGGATGGTCCACCATTGGGATTGGAGTTTGATTCTCCTCCTGCAAATGCCTTTGATCGTCAAAATGATTTTGAAAACTGTCATTGTTGTCAAGATGATCAGAGAAAACTCAAAAGGAGAAAGGTTTTGAAGTCTTCCACTTCTGCTAGTGGGGGGAAGCAAGCAAAGAAAATTCCAGATAAGAAGTATGGCATGGGAAAAGCTCTGATGACAGTATGGCGTGCAACTAATTCTTGCAATGGGAAATTTCCGGCTGGGCTCAACTTATTCAATAGAAAAGCTCACAGTCTGCCTTCCACATCACATATGGAAACTAAACCGGGCAAGTTTAAGAAAAAAATGGTTAAGAAGCCTCCTAGAAGAAGAAAGGTGCTGAGAAACGTGGATGCAAATTTGGAAAAACCTCATCATTTAGATTGCAAGCTTATGATCAATGAAGCGCATATTTCACACTCATCAGAATCTTTTACCTCTTTGGTTGATGATGAAGAGCTTGAACTCATGGAGTTTGAGGCAACGTCAACTCCATTTAGATGTTCTGAGCATCTCGGTGCAATCAGGGGGCAAGGTTGCCCGCTTTGTAAAGATGTTTTGGCCAGGTTTCCCCCAAAATTAGTAAAAATGCAACAGCCCATTACTGCAAAGCCTTGGGTTTTTTCTCCTGAACTTGTAAAGAAATTGTTCAAGGTCTTTATGTTCTTGTATAAGCATGCTACTGCCATTGAGATATGCCCTTTTACACTTGATGAGTTAGCTCAAGCATTCAAAGATAAGGATTCATTGTTATTGGGAAAAATCCATGTTGAGCTTCTCAAACTTTTTTTATCATGCGTCGAAAAGGAAATGTATACTGGATTTATAGCTCGCAGTTTCAAAGATTGCAGATTTTTGAGTTTCCTTCATTTTGTCAGAGAAAGCGAGTTTGATATCAAATTTTGGTTCCAGTCTATTAATTCTCTTTCATGGGCAGAAATTCTTCGACAAGTGTTGATAGCAGCAGGGTTCGATGGAAAATGCAATTCTTCAAGTAGAGACTGCTTTAGTAAGAAAAAAAATCAGATGGTGAACCTTGGTCTGCAACCTTGTACCCTGAAAAGTGAACTCTTTCAGATCTTATCAAAGCAGGGAAGCCTTGGCCTGAAAGTTTCCGAGTTGGTAAAAATGCCTCAGATTGTCACATTGGACCTTCCAAGCACAACAGCAGGGCAGGAGGAACTATTAAAATCCATTCTTTCAGGTGACATTACATTGTTTGAAAAAATAGGGACAGCATCTTACCGCCTTCGATGTAATAACCAAATTAAAGGTAAAAATGGTACCCAGTCTGAGGATAATGGCTCAGGAAGTGTGGAGGATGAATATAGTGATGCATATATAAGTGGCAGTAATGATTATTCTGAGGAGGAGAGTTCAGGGCCTTGTAAACAGAGAATTGACAACAATAAGAAAATGAGTAAAAACGCACGTCAAAAGTTGATTGAATCTTCTGAGATTGATGAAAGCTCTAAAGGGGAAGCTTGGGTTCAAGGTTTAATGGAGGGCAACTATTCAAATCTAAGTACTGGGGAGAAGCTGGATGCTTTGGTTGCTCTCGTAGATCTTGTTGGTGCTTGCTCATGTCTTAGAACTGCAGGTCTAGAAGGGCACATGTTTGCTATTACTTCTGGTGTTCAATATCTTGGACCGGGAGCAAAAATAAAGAGGCAGCCATCAATAATTAATTCATCATCCAGCAATGGCCGAGAGGTATATGCAGACCATGCTGTAGCCGAACATGCCTTGAGAAATGTCTCACAGGCTGGTTCTATATCCTCTTTGATGGTGTCTAAGAAGGGGCAGTCTTCTGGCCGTACTGAAGATGCACCACCTGAAGTGCATCCACTGAAATCAATTTATTTGGGATCTGATCGCAGGTACAATAATTATTGGCTTTTTCTTGGTCCCTGCAATGCAACTGATCCTGGCCATAGACGCATTTATTTTGAATCTTCCGAAGATGGCCATTGGGAAGTGATCGAAACAAAACAGGCCTTGCGTGATCTATTATTAGCTTTAAACAGCAGGGGCACAAGGGAAGCTTGTCTTCTTGCCTCTTTGGAGAAGCGAGAGGCATTTTTATGTAAATCTATGGATGATTACCTTGCCACTGAATATAGAAGCAAACAGTCACAAGGATCTGATCAATCTGAAATTGATTCAAATGGTGGAGATGGTTCTTCACCTAATTCAGATGTTGATAACATGTTGGTATCTGCACATCCAAATGATAGTTTTTCACCAGCTTCTACTGTAGTTTTTTGTTGTGGTAGTAGTACAAAGGAGAATAAACAATATTGGGACCGTCTGCAAGCATATGATAGATGGATTTGGAGCTCTTTCTATTCCAGTCTTAATGCCGTGAAAAACTATAAAAGACCCTATATGGAATCTCTTACTCACTGTGAGAGTTGTCACGACTTGTACTGGAGAGATGAGAAACACTGTAAAGTTTGTCATTCCACCTTTGAAATGAACATTGATCTGGAAGAAAGATATGCTATTCATGCAGTGACCTGTAGGGAAACAGATGAAGGTAGTGATTTTCCAAATCATAAGGTTCTACCTTCTCAATTGCAAGCATTGAAAGCAGCAATTCATTCAATTGAGGGAAGCATGCCTCCTGAGGCTTTTTCTGGAGGATGGAAATGCTCAGCTCATAAGCTTTGGGTGAAGAGACTTCGGCGTACTTCCTCTCTGCCTGAACTTATGCAGGTATCTTCTGATTTTGTCAATGCAATGAATGAGGAGTGGCTATATCATAATGTAGCAGCTTTATGTTCTTATTCATCCTTGGATGAGGTTATTGCATATTTTCAGACTATGCCAAAAACAACCTCTGCTGTTGCGCTTTGGATGATTAAGTTGGATAGGCTTATTGCTCCTTATCTGGAAAAGTTACAATCTGAAAGAATCCCACCATGCAGATCTAAAATGAAAGGGAAATAACAAAAGATAATACCTGGCAGAGTTTGTCGTGATTCTGTTATTTGATTCTGATACAGGCATTCTTATGAGAATTTTCCAGTTCTCCAAGAAGGGCATATCTCTGTACAGCCTTATTTCTTCAGCAATCAAATCAGTTCTGAACATCTTTTGAGTTTCAGAAATATATATATGCAGCGATGGACATATTCTTTCTCCTCCATTTACTTCTCCATTGCAAGGTTTGCGTGGCATTTATACTCAATATTTGTCAGCTCAGTCAACGAGAATCCACCTATTAATATCATTTTTTTTACAATTTTCTGAAAGATTTTGATCTCCCGACATTTTTTGCAGCTTACAGAGCTTTCTATGTTGTTTAATTCAAATAAGTAACTTTGAAAGCATGAAACTTTGAACAATTGCATCATTATTTTCTTAAGTGGTATAAATAAGTTATTTTATGAATTTTACGGTTTTTGTTTTGTTGTTACTATGAATGTAATCATATCAAGATTTGTGTTAAGTTTGGCTCATTAGCTTTATCTAGGATCAAAATATATAATTTTGTTTAGGCATTCATTGTGAAATTTTATTGTAATAACTGGTTTATGAGCCAGTAAGCCTAGTTCTTCTGAGCTTGAGCTTGGACTTGAACTTGTTTGATGATCAAAAACAAACTCACGAACTTAATAAGCTTTT

Network for GWHGAAEX012549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02791.16	DDT	283	335	8.00E-06
PF15612.5	WHIM1	564	595	3.50E-06
PF15613.5	WSD	690	762	2.30E-11

Protein Sequence

>GWHPAAEX012549
MTRSKKYKRSSTTNGPMESLTSNSRHRKKGCNELGCRGKKPLLGIQSFLSKEYILSRVFRKDGPPLGLEFDSPPANAFDRQNDFENCHCCQDDQRKLKRRKVLKSSTSASGGKQAKKIPDKKYGMGKALMTVWRATNSCNGKFPAGLNLFNRKAHSLPSTSHMETKPGKFKKKMVKKPPRRRKVLRNVDANLEKPHHLDCKLMINEAHISHSSESFTSLVDDEELELMEFEATSTPFRCSEHLGAIRGQGCPLCKDVLARFPPKLVKMQQPITAKPWVFSPELVKKLFKVFMFLYKHATAIEICPFTLDELAQAFKDKDSLLLGKIHVELLKLFLSCVEKEMYTGFIARSFKDCRFLSFLHFVRESEFDIKFWFQSINSLSWAEILRQVLIAAGFDGKCNSSSRDCFSKKKNQMVNLGLQPCTLKSELFQILSKQGSLGLKVSELVKMPQIVTLDLPSTTAGQEELLKSILSGDITLFEKIGTASYRLRCNNQIKGKNGTQSEDNGSGSVEDEYSDAYISGSNDYSEEESSGPCKQRIDNNKKMSKNARQKLIESSEIDESSKGEAWVQGLMEGNYSNLSTGEKLDALVALVDLVGACSCLRTAGLEGHMFAITSGVQYLGPGAKIKRQPSIINSSSSNGREVYADHAVAEHALRNVSQAGSISSLMVSKKGQSSGRTEDAPPEVHPLKSIYLGSDRRYNNYWLFLGPCNATDPGHRRIYFESSEDGHWEVIETKQALRDLLLALNSRGTREACLLASLEKREAFLCKSMDDYLATEYRSKQSQGSDQSEIDSNGGDGSSPNSDVDNMLVSAHPNDSFSPASTVVFCCGSSTKENKQYWDRLQAYDRWIWSSFYSSLNAVKNYKRPYMESLTHCESCHDLYWRDEKHCKVCHSTFEMNIDLEERYAIHAVTCRETDEGSDFPNHKVLPSQLQALKAAIHSIEGSMPPEAFSGGWKCSAHKLWVKRLRRTSSLPELMQVSSDFVNAMNEEWLYHNVAALCSYSSLDEVIAYFQTMPKTTSAVALWMIKLDRLIAPYLEKLQSERIPPCRSKMKGK

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.020
SRP064423	SRR2545915	Juvenile tuber	16.120
SRP108465	SRR5643513	five period of Gastrodia elata	7.950
	SRR5643514	five period of Gastrodia elata	6.460
	SRR5643515	five period of Gastrodia elata	6.360
	SRR5643524	five period of Gastrodia elata	6.830
	SRR5643525	five period of Gastrodia elata	2.920
	SRR5643528	five period of Gastrodia elata	1.890
	SRR5643658	five period of Gastrodia elata	1.470
	SRR5643659	five period of Gastrodia elata	11.680
	SRR5643660	five period of Gastrodia elata	15.990
	SRR5643661	five period of Gastrodia elata	11.940
	SRR5643662	five period of Gastrodia elata	10.030
	SRR5643663	five period of Gastrodia elata	8.940
	SRR5643664	five period of Gastrodia elata	12.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.490
SRP279888	Gastro	Gastrodia elata tuber	17.39
	Juven	Juvenile tuber	22.01
	Mother_Gastro	Mother tuber of Gastrodia elata	3.34
	Mother_Juven	Mother tuber of Juvenile	9.67