Gene detail

Detail information of GWHGAAEX012553/evm.TU.scaffold_44.87

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743849073\|ref\|XP_010939528.1\|	0	PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 [Elaeis guineensis]
trEMBL	tr\|M0T3M3\|M0T3M3_MUSAM	2.00E-179	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P02750_001}
TAIR	AT1G30240	6.00E-145	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	1592369	1601965	-

Transcript Sequence
>GWHTAAEX012553 TGAAACCTTCCCTAAAGTTCTTATAGCTTAGCATTAAGCCCTAGAAAAACGTACTCAGAGCGAGGCAGCCTTTCGAGTGCGGCCATGGCGGAGCTCTTTAGTGGCATGAATGACAGTCGCCTGAAGCCGCCCATGCTGCGGTCAGTGGTTCGTGATCGTCTTATCGACGAGAAGCGGCCATTTCCCAGTTCCGCTGAGATTGCCCGCGTTATCTCTCAGGTGCGCACTCACGGGCTACTCTCAGAGCGCCTGTCTGACGCCGGCGACCGTAAGCTTTCTGAGGCGTGGGCTTCGGCCGTCGATGGCTGGGTCGAGCGCATCGTTTTGCTCGCATCGAGCAGCGCGTTAGACAAGTGTTGGACTGGAAGCTGCTTGCTTGGTGTGACATGCCAAGAATGCTGCTCTGATCGTTTCCAGTCATCATACACTGATTGGGTTCAGAGACTTCTCGAAAACTTGCAGTCTCAATCCAGCAATCATATTATCAAAGTTGCTTGTTGTGCATCACTGTCCGATCTTTTTTTGCGGTTATCTAACTTTTCAAATCATAAACAAAATGGAATAGTACTTGCTAGAAAATTTGTTCAGCCAGTTCTACAGATGTTAAATGAGGATGCTGGAGAAAATGAAGCGGCAGCAAATTTGTTGTGCACGCTTATAACCTTCTTTCCATCATCTATACAACGTCATTGTGACAATGTTGAAGCTGTTCTTACTTCAAAGATAATGACTGCAAAATGTAACTTACATACTTCTGAGAAACTTTCTTGCAGTTTAGCGATGCTTCCCAAGGTTAAAGGAGATAAAGATAGCTGGTGTGTATTTATTCAGAAGATTCTCATAGCCATTAACTCAATTCTTAGTGTTGTGTTCCAGGGATTTGAAGAAGAAAGGAAAAGTTTTGACGTTATGAAAATTATAGTTCCTCCGGGTAAGGATCCTCCACCTTTTTTGGGAGGTCAAACTTTGTCTGGAGAAACATCTGAATCTGTAATCAAAAGATTGAGTGAATTACTTGTGCTGAGAGTGATTGCTCTAATGCATTCTTGCAGTATTATGCTTGATAACTTCCCTTCTGAGGTATCAATTCCTGTACCTTCATTGCTAGCTACAGTTGGGAGAGTGCTTCAGTTGGATGGTTCTTTTCGTGAATCTATGTTTCCTTTGGCAACTTCCATGCATCAGGAACTTCTTTGTGCAGAGCTCCCAGCCGTTCATCTGGGTAGCTTGGATCTTCTGATTGCAGTTGTGAAAGTTCGAAGCATCTTCTGGTCACATGGCCCCAGCATTGTGCGGCTTCTTACTGAATATATTCGTAGAGCCAGGATGCCTACCATAAGGATAAAAGTATACTCTATCGTGCAGATGCTACTTACCTCCATGGGTGTTGGAGCGGCTCTTCCCCTTGTCCAAGAACTAATTAATAATGCTTTTGCTGACCTTACTGATAACCGTGAGCTGGGGAGTAGCGCAGTGCTTTCCAATACACAGTCAACTGCCTTAGTTAGTGAGACATTTCAACAAAATCAATCACGGAAGAAGAGGAAGCTTGTTGCTGCAATCCCTTCGAAATATCCCAATGGGGCTGATTTAAGCGTTAAACCTTGCAGCAAGAAACCACAAGTTCTTCTTTCAGTGAAGATTGCTGCACTTAAAGCATTGGAAGCTCTTCTTTCAATGAAGGGTTCTTCAGCGTCTGCGCATTGGCGTTCCGATGTTGATTGCCTTGTGGCAACCGTGGCAACAAATGCTTGTGCTGCAGGATGGGAAAATGTGGCTGAGCCATCCTTGCTGGAAAATGAGCCCACTTTTGCTGATTTTCAGCTCGCCAGCTTAGAGGTGTTGTTAACTTCTCTTATTTCATATACTCGAACCCGGCCTTCGTTTTTATCCCAAGGTTTCATTCTTTTTCAAAGAGGGATGATGAAAACTGGATCAAAGATAGCTTCCTTCTGTGCTCATGCCTGCCTCGTTCTAGACCTCATACAACATCCTCGTGGCCTTCCACTTACTGATCATCTTCTTCATGAAACTCAATCAATCGGCACAGAAAGATTCAACCCTAGCATTAATCCAAACTTGCCATCAAATGGTGATTTAGCGCTACTTGACGAGGAGGATGAAGAACTGTCCCGTTCTTGGCTTGATAAGAGTGACCTGATTGATAATAAATTTGCCGAAAACATCAAGCAATCTTCACATGCCTCCGAAGATATCATCATTAAAAATAATGTAGATGTAGAGATGGCTTCCTTGAGCAGAAATGAAGCATCTGTTGATTCCGAAATGGCTAAAGAGGTCAAAGCAGAAGATGATTCGCATAATAAGATTGATTCTAGGCGCCAAGGAAGTTTTGAGATGGTGGCAGGTGAAAGTGGGAGTCCTTTACAGACACCTGAAAATGCTGACTTGAGTGAACAAAGTGGTGTTTTGGAAAGATTGCCTGATTTGAACAATACTGGAAGAAAGGATGCTGTTTTATCTTATTACTCAGACTCTCCTTCACTTGATTCATTGCCAGATATTGTGGATGGTGATCCTGACACCGAGTAACATCTATCTTATAAAAAGACTGTAGAAAGGTAGAGGTAAATTATATTTTTTTTTTTGAAGAAGTTGAGCATCTAAGGCAAATATGTTGCGGGTGGGATTCAACACAAAAGCTCAACCATTGAACCATAGCAACACTCTTATAGTTAGATATTGTGTACGGTGTTGTAGTTCAAT

Network for GWHGAAEX012553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08167.11	RIX1	24	220	7.80E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.040
SRP064423	SRR2545915	Juvenile tuber	35.190
SRP108465	SRR5643513	five period of Gastrodia elata	19.760
	SRR5643514	five period of Gastrodia elata	19.480
	SRR5643515	five period of Gastrodia elata	16.530
	SRR5643524	five period of Gastrodia elata	18.090
	SRR5643525	five period of Gastrodia elata	13.150
	SRR5643528	five period of Gastrodia elata	10.030
	SRR5643658	five period of Gastrodia elata	12.000
	SRR5643659	five period of Gastrodia elata	28.550
	SRR5643660	five period of Gastrodia elata	27.880
	SRR5643661	five period of Gastrodia elata	23.710
	SRR5643662	five period of Gastrodia elata	25.710
	SRR5643663	five period of Gastrodia elata	25.950
	SRR5643664	five period of Gastrodia elata	25.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	16.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	16.920
SRP279888	Gastro	Gastrodia elata tuber	23.58
	Juven	Juvenile tuber	38.91
	Mother_Gastro	Mother tuber of Gastrodia elata	31.19
	Mother_Juven	Mother tuber of Juvenile	26.00