Detail information of GWHGAAEX012555/evm.TU.scaffold_44.89
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434397181|ref|YP_007131185.1| | 0 | Phosphoglucomutase [Stanieria cyanosphaera PCC 7437] |
| KOG | KOG0625 | 0 | Phosphoglucomutase |
| nr | gi|743856827|ref|XP_011030017.1| | 0 | PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica] |
| Swissprot | tr|Q9SCY0|PGMP_ARATH | 0 | Phosphoglucomutase, chloroplastic (Precursor) |
| trEMBL | tr|A0A068UAH1|A0A068UAH1_COFCA | 0 | Coffea canephora |
| TAIR | AT5G51820 | 0 | phosphoglucomutase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 1660284 | 1677906 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012555
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02878.15 | PGM_PMM_I | 57 | 183 | 9.10E-28 |
| PF02879.15 | PGM_PMM_II | 217 | 320 | 9.90E-13 |
| PF02880.15 | PGM_PMM_III | 328 | 451 | 4.80E-28 |
| PF00408.19 | PGM_PMM_IV | 512 | 563 | 1.10E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071704 | Biological Process | organic substance metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0016868 | Molecular Function | intramolecular transferase activity, phosphotransferases |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 38.630 |
| SRR2545915 | Juvenile tuber | 52.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 54.940 |
| SRR5643514 | five period of Gastrodia elata | 59.080 | |
| SRR5643515 | five period of Gastrodia elata | 64.240 | |
| SRR5643524 | five period of Gastrodia elata | 54.440 | |
| SRR5643525 | five period of Gastrodia elata | 36.380 | |
| SRR5643528 | five period of Gastrodia elata | 35.620 | |
| SRR5643658 | five period of Gastrodia elata | 34.080 | |
| SRR5643659 | five period of Gastrodia elata | 71.270 | |
| SRR5643660 | five period of Gastrodia elata | 65.560 | |
| SRR5643661 | five period of Gastrodia elata | 67.450 | |
| SRR5643662 | five period of Gastrodia elata | 82.990 | |
| SRR5643663 | five period of Gastrodia elata | 86.100 | |
| SRR5643664 | five period of Gastrodia elata | 81.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.770 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.45 |
| Juven | Juvenile tuber | 41.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.35 | |
| Mother_Juven | Mother tuber of Juvenile | 30.82 |