Detail information of GWHGAAEX012556/evm.TU.scaffold_44.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|114320491|ref|YP_742174.1|3.00E-111succinate dehydrogenase iron-sulfur subunit [Alkalilimnicola ehrlichii MLHE-1]
KOGKOG30493.00E-150Succinate dehydrogenase, Fe-S protein subunit
nrgi|672160315|ref|XP_008799935.1|1.80E-164PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Phoenix dactylifera]
Swissprottr|Q8LB02|SDHB2_ARATH1.00E-150Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (Precursor)
trEMBLtr|M0RQK4|M0RQK4_MUSAM2.00E-164Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial {ECO:0000256|RuleBase:RU361237}
TAIRAT5G406503.00E-150succinate dehydrogenase 2-2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004517016951716800-
Transcript Sequence

Network for GWHGAAEX012556

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13085.5Fer2_3942009.80E-32
PF13534.5Fer4_172383119.40E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00235SDHB, SDH2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Citrate cycle (TCA cycle)map00020
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006099Biological Processtricarboxylic acid cycle
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
GO:0009055Molecular Functionelectron carrier activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0051536Molecular Functioniron-sulfur cluster binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms57.820
SRR2545915Juvenile tuber84.320
SRP108465SRR5643513five period of Gastrodia elata142.190
SRR5643514five period of Gastrodia elata147.000
SRR5643515five period of Gastrodia elata144.370
SRR5643524five period of Gastrodia elata154.500
SRR5643525five period of Gastrodia elata160.040
SRR5643528five period of Gastrodia elata174.880
SRR5643658five period of Gastrodia elata143.180
SRR5643659five period of Gastrodia elata153.630
SRR5643660five period of Gastrodia elata161.440
SRR5643661five period of Gastrodia elata178.440
SRR5643662five period of Gastrodia elata209.280
SRR5643663five period of Gastrodia elata199.210
SRR5643664five period of Gastrodia elata194.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1171.100
SRR6049655Rhizomagastrodiae_C368-T10_good_1267.420
SRR6049656Rhizomagastrodiae_C368-T07_good_1197.890
SRR6049657Rhizomagastrodiae_C368-T07_good_1167.820
SRR6049658Rhizomagastrodiae_C368-T04_good_1174.520
SRR6049659Rhizomagastrodiae_C368-T04_good_1161.350
SRR6049660Rhizomagastrodiae_C368-T01_good_1158.480
SRR6049661Rhizomagastrodiae_C368-T04_good_1176.950
SRR6049662Rhizomagastrodiae_C368-T01_good_1225.460
SRR6049663Rhizomagastrodiae_C368-T01_good_1199.740
SRR6049664Rhizomagastrodiae_C368-T10_good_1211.430
SRR6049665Rhizomagastrodiae_C368-T10_good_1211.430
SRP279888GastroGastrodia elata tuber 188.10
JuvenJuvenile tuber188.80
Mother_GastroMother tuber of Gastrodia elata 129.24
Mother_JuvenMother tuber of Juvenile 131.82