Detail information of GWHGAAEX012557/evm.TU.scaffold_44.91


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|261417229|ref|YP_003250912.1|1.00E-18methionyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85]
KOGKOG22412.00E-77tRNA-binding protein
nrgi|672180306|ref|XP_008810340.1|1.72E-97PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Phoenix dactylifera]
Swissprottr|Q9ZTS1|SYM_ORYSJ4.00E-36Probable methionine--tRNA ligase
trEMBLtr|M0STH6|M0STH6_MUSAM4.00E-95Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P30640_001}
TAIRAT3G599802.00E-77Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004517173151729125+
Transcript Sequence

Network for GWHGAAEX012557

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01588.19tRNA_bind811753.20E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0000049Molecular FunctiontRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.780
SRR2545915Juvenile tuber23.410
SRP108465SRR5643513five period of Gastrodia elata34.630
SRR5643514five period of Gastrodia elata39.690
SRR5643515five period of Gastrodia elata33.160
SRR5643524five period of Gastrodia elata42.910
SRR5643525five period of Gastrodia elata52.640
SRR5643528five period of Gastrodia elata59.740
SRR5643658five period of Gastrodia elata47.350
SRR5643659five period of Gastrodia elata29.810
SRR5643660five period of Gastrodia elata32.040
SRR5643661five period of Gastrodia elata33.450
SRR5643662five period of Gastrodia elata35.490
SRR5643663five period of Gastrodia elata40.170
SRR5643664five period of Gastrodia elata35.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.170
SRR6049655Rhizomagastrodiae_C368-T10_good_115.740
SRR6049656Rhizomagastrodiae_C368-T07_good_123.500
SRR6049657Rhizomagastrodiae_C368-T07_good_120.550
SRR6049658Rhizomagastrodiae_C368-T04_good_126.740
SRR6049659Rhizomagastrodiae_C368-T04_good_124.980
SRR6049660Rhizomagastrodiae_C368-T01_good_130.400
SRR6049661Rhizomagastrodiae_C368-T04_good_120.400
SRR6049662Rhizomagastrodiae_C368-T01_good_127.380
SRR6049663Rhizomagastrodiae_C368-T01_good_123.760
SRR6049664Rhizomagastrodiae_C368-T10_good_128.750
SRR6049665Rhizomagastrodiae_C368-T10_good_128.750
SRP279888GastroGastrodia elata tuber 38.54
JuvenJuvenile tuber25.40
Mother_GastroMother tuber of Gastrodia elata 22.84
Mother_JuvenMother tuber of Juvenile 19.59