Detail information of GWHGAAEX012558/evm.TU.scaffold_44.92


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16771.00E-51CCCH-type Zn-finger protein
nrgi|719977199|ref|XP_010248777.1|2.40E-61PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1 [Nelumbo nucifera]
Swissprottr|Q9STM4|C3H43_ARATH3.00E-52Zinc finger CCCH domain-containing protein 43
trEMBLtr|M5WCW0|M5WCW0_PRUPE1.00E-56Uncharacterized protein {ECO:0000313|EMBL:EMJ11136.1}
TAIRAT3G484401.00E-51Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004517315521752009+
Transcript Sequence

Network for GWHGAAEX012558

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH25492.10E-08
PF14608.5zf-CCCH_2811011.5
PF00642.23zf-CCCH1231489.80E-09
PF00642.23zf-CCCH3063314.40E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms158.250
SRR2545915Juvenile tuber189.410
SRP108465SRR5643513five period of Gastrodia elata61.790
SRR5643514five period of Gastrodia elata50.850
SRR5643515five period of Gastrodia elata65.200
SRR5643524five period of Gastrodia elata51.410
SRR5643525five period of Gastrodia elata48.860
SRR5643528five period of Gastrodia elata51.530
SRR5643658five period of Gastrodia elata51.090
SRR5643659five period of Gastrodia elata97.040
SRR5643660five period of Gastrodia elata140.170
SRR5643661five period of Gastrodia elata104.020
SRR5643662five period of Gastrodia elata151.980
SRR5643663five period of Gastrodia elata127.920
SRR5643664five period of Gastrodia elata168.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_182.010
SRR6049655Rhizomagastrodiae_C368-T10_good_195.660
SRR6049656Rhizomagastrodiae_C368-T07_good_169.530
SRR6049657Rhizomagastrodiae_C368-T07_good_1110.310
SRR6049658Rhizomagastrodiae_C368-T04_good_199.330
SRR6049659Rhizomagastrodiae_C368-T04_good_1115.030
SRR6049660Rhizomagastrodiae_C368-T01_good_188.350
SRR6049661Rhizomagastrodiae_C368-T04_good_193.710
SRR6049662Rhizomagastrodiae_C368-T01_good_144.580
SRR6049663Rhizomagastrodiae_C368-T01_good_160.260
SRR6049664Rhizomagastrodiae_C368-T10_good_138.880
SRR6049665Rhizomagastrodiae_C368-T10_good_138.880
SRP279888GastroGastrodia elata tuber 166.12
JuvenJuvenile tuber80.66
Mother_GastroMother tuber of Gastrodia elata 77.85
Mother_JuvenMother tuber of Juvenile 63.71