Detail information of GWHGAAEX012566/evm.TU.scaffold_44.101


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|218780813|ref|YP_002432131.1|1.00E-56ribose 5-phosphate isomerase [Desulfatibacillum alkenivorans AK-01]
KOGKOG30753.00E-105Ribose 5-phosphate isomerase
nrgi|743800682|ref|XP_010926067.1|6.11E-125PREDICTED: probable ribose-5-phosphate isomerase 1 [Elaeis guineensis]
Swissprottr|Q9C998|RPI1_ARATH9.00E-106Probable ribose-5-phosphate isomerase 1
trEMBLtr|A0A061E7F0|A0A061E7F0_THECC2.00E-106Ribose-5-phosphate isomerase 2 {ECO:0000313|EMBL:EOY00901.1}
TAIRAT1G711003.00E-105Ribose 5-phosphate isomerase, type A protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004517968361801796-
Transcript Sequence

Network for GWHGAAEX012566

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06026.13Rib_5-P_isom_A802591.10E-58
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01807rpiA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.190
SRR2545915Juvenile tuber12.730
SRP108465SRR5643513five period of Gastrodia elata14.780
SRR5643514five period of Gastrodia elata16.090
SRR5643515five period of Gastrodia elata14.010
SRR5643524five period of Gastrodia elata15.040
SRR5643525five period of Gastrodia elata26.580
SRR5643528five period of Gastrodia elata29.540
SRR5643658five period of Gastrodia elata15.160
SRR5643659five period of Gastrodia elata32.180
SRR5643660five period of Gastrodia elata29.000
SRR5643661five period of Gastrodia elata32.640
SRR5643662five period of Gastrodia elata32.010
SRR5643663five period of Gastrodia elata30.060
SRR5643664five period of Gastrodia elata26.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.940
SRR6049655Rhizomagastrodiae_C368-T10_good_112.230
SRR6049656Rhizomagastrodiae_C368-T07_good_118.350
SRR6049657Rhizomagastrodiae_C368-T07_good_113.030
SRR6049658Rhizomagastrodiae_C368-T04_good_117.790
SRR6049659Rhizomagastrodiae_C368-T04_good_112.930
SRR6049660Rhizomagastrodiae_C368-T01_good_116.760
SRR6049661Rhizomagastrodiae_C368-T04_good_115.620
SRR6049662Rhizomagastrodiae_C368-T01_good_124.000
SRR6049663Rhizomagastrodiae_C368-T01_good_121.070
SRR6049664Rhizomagastrodiae_C368-T10_good_123.110
SRR6049665Rhizomagastrodiae_C368-T10_good_123.110
SRP279888GastroGastrodia elata tuber 34.87
JuvenJuvenile tuber25.24
Mother_GastroMother tuber of Gastrodia elata 25.50
Mother_JuvenMother tuber of Juvenile 24.26