Gene detail

Detail information of GWHGAAEX012572/evm.TU.scaffold_44.109

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2084	5.00E-105	Predicted histone tail methylase containing SET domain
nr	gi\|695016461\|ref\|XP_009395139.1\|	1.56E-126	PREDICTED: histone-lysine N-methyltransferase ASHR2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9ZUM9\|ASHR2_ARATH	2.00E-105	Histone-lysine N-methyltransferase ASHR2
trEMBL	tr\|W1PFK2\|W1PFK2_AMBTC	2.00E-113	Uncharacterized protein {ECO:0000313\|EMBL:ERN06421.1}
TAIR	AT2G19640	5.00E-105	ASH1-related protein 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	1936496	1941978	+

Transcript Sequence
>GWHTAAEX012572 TTCCCCAAACAAACAAAATAAAATAATATAAACTCTATACCCAACGCATCGAACTCTCAACATATCTTCACAGACCGCAGTTTAATGGCGGCGGTGGCGGCGGAGGCGGCGAGCTCATCGCCGGAACCTCCCGTGAAGATCGTAGAGATGCCGGGTCGAGGTCGAGCACTCATAGCCTCCCGCAGCATCCAAGCAGGTGAGGTCCTTCTCTCAGACTCCCCTCTTCTTCTTTACCCTGCCGCTCCAAATGCCAAACCCTACTGCTCCCATTGCTTCCGATCCGCGCCCTCCGCTCCCATCCGTTGCCCTTCCTGCCCCTCCGCCATTTTCTGCTCTGCGCACTGCTTCTCTGCCGCTCTCTCTTCATCCCATTCCCCCTCCCTTTGCCGCACTCTTTCCTCGCTCCCTCCCTTCCCAGATCCCGAGCTCTTCGCCCAGGCCCGCTTCCTCCTCGCCGCCTCCACTCTCTCATCCTGCAGCTTCGACCGCCTGATGTCCCTCGACAGCGCGCATTCCGCCCCTGCGCACCAGGAGGCGATTTTCCTCCATTCCCTTCTCGGCCCCATCACCGGCCTCTCGCTCAATGCGACGGCCTTGCTGATCGCAAAGGACAGAAGAAACGCCTTCGGCCTCATGGAGCCCTTCGACGGCGGCGACCGAAGCGTGAGGGCTTATGGAATCTACCCCAACGCGTCGCTTTTCAACCACGACTGCTTGCCCAACGCCTGCCACTTCGACTACCTTGATCGCGGCAGCGCGGACATCACCATCCGGGCAATTCACGACATTCCCGAGGGAAGAGAGCTCTGCTTGAGCTATTTTCCGGTGAATTGGGGATACAAGGAAAGGCAGCGGAGATTGCTGGAGGATTATGAGTTTCACTGCCGCTGCGATAGATGCGAAATCGAGAAGAATTGGAAGGATGAGGAAGAAGAGGCTGGCGAGAATGCCGGAGATGGAGATGATGATGATGATGACTTTCCCCATGCTTATTTCTTTGCGAGGTTTGTTTGCGATCAGGAAAACTGCGGAGGAACATTGGCTCCTCTTCCTCCATCGTCACAGGGCGCTCCAGCAGGTTTGATAGAGTGCAATGTGTGCGGCCGGTTAAAGAATGATGATGAGGATGACGATGAAGATGGCATGATGCTTGATTAGGTTAGGTGGCTGTTGTTCGATTGCAGATTATGGGCAATTTGTTCTATCACTGCTGATGGCTAATCTCATCCTTATTTTGATCTGATAAGGTGCAAAACCAAAAGGTATTTTGTAGCCAAGGGTGGATCTACTATGAGGGCATTGGGGGCATGTGCTCCCACTGACATTGCAAATATAATATATATATAATATTTATTTAGTTAAACACATGTGTTTTTGAGAAATTAGAGGTTGCGGTTTTGAACCCTTTTAACTTTATTTTATATATTTACTCTTAATGTTCTCTTCTTTTATTATCCTTTTCTCCATGGAAGCAATTGTTCTCTCCGCTCATTGTTTCTTCTTTTTTTGGGTAGAGCCTCTTCATCATCTATTGTTCTTTTCTTTACAGTAGCGACTATCATTGGTGAGATTCTCTCCACTTATTTTCTTAATTTGATATTGTTGCTGCAATGGTGCAGATACAGTTTACAATATCTATACTATGATACATCTAAAGCTTTGACATTGTGATTTGTTTATCTCTTGCTGCTTAGTAGAGGAGTAAGAAGCTGTGTTCGAGGATTGGTGAATTGATAATCCTACT

Network for GWHGAAEX012572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.27	SET	26	245	1.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
K11426	SMYD	Metabolic pathways	map01100
K11426	SMYD	Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.950
SRP064423	SRR2545915	Juvenile tuber	13.190
SRP108465	SRR5643513	five period of Gastrodia elata	16.110
	SRR5643514	five period of Gastrodia elata	14.390
	SRR5643515	five period of Gastrodia elata	14.890
	SRR5643524	five period of Gastrodia elata	14.890
	SRR5643525	five period of Gastrodia elata	10.940
	SRR5643528	five period of Gastrodia elata	7.750
	SRR5643658	five period of Gastrodia elata	7.580
	SRR5643659	five period of Gastrodia elata	19.060
	SRR5643660	five period of Gastrodia elata	19.630
	SRR5643661	five period of Gastrodia elata	20.460
	SRR5643662	five period of Gastrodia elata	16.690
	SRR5643663	five period of Gastrodia elata	17.320
	SRR5643664	five period of Gastrodia elata	19.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.940
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.980
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.840
SRP279888	Gastro	Gastrodia elata tuber	15.58
	Juven	Juvenile tuber	26.08
	Mother_Gastro	Mother tuber of Gastrodia elata	9.18
	Mother_Juven	Mother tuber of Juvenile	17.44