Gene detail

Detail information of GWHGAAEX012574/evm.TU.scaffold_44.111

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2039	Transcriptional coactivator p100
nr	gi\|743878473\|ref\|XP_010908182.1\|	PREDICTED: staphylococcal nuclease domain-containing protein 1-like [Elaeis guineensis]
trEMBL	tr\|M0T577\|M0T577_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P08280_001}
TAIR	AT5G07350	TUDOR-SN protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	2099140	2110036	-

Transcript Sequence
>GWHTAAEX012574 ATGGCAACTGCTCCTGCGGCATCTGGATGGCTGAGGGGAAGAGTGAAAGCAGTTCCATCAGGAGATACTCTTGTGATTATGGGAAGCACAAAAGCAGAAATTCCTCCAGAGAAGTCCATAACTTTATCTTACATCATGACGCCTAGGCTGGCTCGCAGAGGCACAATGGATGAACCGTTTGCATGGGATAGCAGAGAGTTTTTGAGAAAACTCTGCATAGGAAAGGAGGTAGTATTCAAAGTGGATTATACTGTTTCAAACATAAACCGAGAGTTTGGTACAGTATTCCTTGCAGAAAAGAATGTCTCACATTTGGTTGTTTCTGAGGGGTGGGCAAAGGTTAAGGAGCAGGGACAACAAAAAGGTGATGCAAGCCCAGCATTAGCAGAATTGTTGCGGTTGGAGGAGCAAGCTAAGCAACAAGAGCTAGGTCGCTGGAGCAAGGTACCTGGTGCTTCCGAGGCATCAATCAGAAACCTTCCTCCTTCAGCCATAGGCGACCCTAATAATCTCGATGCAATGCAATACTTGGCAGCAAACAAAGGAAAACCCATGCAAGCAATTGTTGAGCAAGTTCGTGATGGTAGCGCTGTTCGTATCTATCTGCTTCCGGAATTTCTGTTTGTTCAAGTTTTAATTGCGGGAATCCAGGCTCCATCTATGGGGAGAAGAGCTGTTGTGGAAGCTATTCCAGGGCCCGAAGTGATTGCTGATGATGCAGACGAAGAAGCGTCTACTGAAACCAGAAACCAGCCAACATCAGCACAGAAACTTCTTATATCGCAGTCATCAGCAACCGAAATTGCACCTGATCCATTTGGGAGAGAAGCCAAACACTTCACAGAAACTCGCACATTAAATCGAGATGTTCGTATTGTGCTGGAAGGTGCTGATAAATTCAGTAACTTGATTGGCTCTTTATATTATCCTGATGGTGATTCTGCCAAAGACCTTGCCTTGGAACTTATTCAAAATGGATTTGCCAAGTATGTGGAATGGAGTGCAAACATGATGGAGGATGACGCAAAGCGGCGACTGAAGTCTGCTGAACTTCAAGCAAAGAAAGACCGTCTGAGAATCTGGACAAATTATGTGCCACCACAAACAAATTCAAAAGCTATTCACGATCAAAACTTTACTGGCAAGGTTGTTGAGGTTGTTAGTGGTGATTGTATCATTGTCGCTGATGACTCCATACCATATGGAAATCCAATGGCAGAACGCAGAGTCAATCTCTCTAGTATCAGATGTCCTAAAATTGGAAATCCTCGTAGAGATGAAAAGCCAGCACCATATGCCCGTGAAGCTAGGGAATTCCTTCGCACACGACTTGTTGGTCGTTCGGTTAAAGTATCCATGGAATATTCTAGGAAGGTAAGCACTTCTGACGGGCCATTTGCAACAGCAGTACCTAGTTCAGATTCTAGGATAATGGATTTTGGGTCAGTTTTTTTATTATCTGCATCAAAAGTTGATGCTGATGATAGCACTCCTGCTCCACCTTCTGTCAGCAGTCAGGCAGAAGGAATTAATGTTGCCGAGCTTGTTGTTTCACGTGGTTTTGGGACAGTTATAAGACACCGAGACTTTGAAGAAAGATCAAACTATTATGATGTTTTACTTGCCGCTGAGTCACGAGCTATCAGCGGGAAGAAGGGGATTAATTCTGCTAAGGACCCGCCGGTTATGCACATCACTGATCTTACAACGGCGTCAGCTAAAAAGGCCAAAGACTTCTTGCCATTTTTACAACGTAGCAGAAGGCTTCCTGCTGTTGTGGAATATGTCTTTAGCGGCCACCGATTCAAATTGATGATCCCTAAGGAAACTTGCAGCATTGCTTTCTCGCTGTCCGGTGTCAGGTGCCCGGGGAGGGATGAGCCTTTTTCAAATGAAGCAATTGCCTTGATGCGGAGGAAGATACTACAAAGGGATGTTGAGATTGAAGTCGAGACGGTAGATAGAACTGGGACATTCTTGGGTTCTTTATGGGAATCGAGGACCAATATGGGCGCTGTACTTCTTGAATCTGGACTTGCCAAGCTTCAGACAAGTTTTGGTGCAGATAGGATCCAGGATGCTCAAACTCTTAGTCAAGCTGAAGAGTCAGCTAAGCTACAGAAGTTAAAAATTTGGGAAAACTATGCTGAGGGACAAGAGAGTGCCAACGGTCTTTCTGCAGAATCAAAAGAGAAGGAAGTGCTTAAGGTTGTGGTCACTGAAGTTCTTGGCGCTGGACAATTTTATGTCCAAACAATTGGTGATCAGAGGGTGGCTACCATCCAAAGTCAGCTTTCTACTTTGAATCTTGGGGATGCTCCATTAATTGGTTCTTTCAATCCCAAAAAAGGAGATATTGTCCTTGCTCAGTTCAGCCTGGATAAATCGTGGAACCGAGCTCTGATTGTAAACGTGCCACGAGGACCCGTTGAATCTCCAAACGACATTTTTGAGGTCTTCTACATTGACTATGGCAACCAGGAGACCGTCCCGTATGCTCGCCTCAGGCATCTCGACCCCTCGGTCTCGTCGGCGCCCGCTCTGGCTCAGTTGTGCAAGCTAGCATACATCAAGGTGCCCGAATTGGATGATGATTTCGGGCAGGAAGCCGCTGAATATCTCAGTGAGTGCACTCTTAACAGTACTAAAGAGTTCCGTGCGATGATTGAAGATAGGGACACTTCCGGAGGTAAAGTCAAAGGGCAGGGCACTGGAACAGTATTGGTGGTCACGCTTGTAGAGGTGGAAGCTGAGATTAGTGTCAATGCTGCCTTGCTTCAGGAGGGGCTGGCTAGATTAGAGAGGAGGAAGAAGTGGGATAGAAAGGAGAGGCAGGCTGCCATGGACAACCTTGAGGAGTTCCAGGCCAAGGCGAAGCGCGAAAGGCTCAAGATATGGCAGTATGGGGACATCCAGTCCGATGAAGAAGAGGACTCCGCCCTTGCCGCCCGTAAATCCGGGGCGGCCCGCCGCTAG

Network for GWHGAAEX012574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00565.16	SNase	40	148	5.00E-13
PF00565.16	SNase	269	362	1.00E-13
PF00565.16	SNase	615	714	7.90E-14
PF00567.23	TUDOR	730	855	5.40E-19

Protein Sequence

>GWHPAAEX012574
MATAPAASGWLRGRVKAVPSGDTLVIMGSTKAEIPPEKSITLSYIMTPRLARRGTMDEPFAWDSREFLRKLCIGKEVVFKVDYTVSNINREFGTVFLAEKNVSHLVVSEGWAKVKEQGQQKGDASPALAELLRLEEQAKQQELGRWSKVPGASEASIRNLPPSAIGDPNNLDAMQYLAANKGKPMQAIVEQVRDGSAVRIYLLPEFLFVQVLIAGIQAPSMGRRAVVEAIPGPEVIADDADEEASTETRNQPTSAQKLLISQSSATEIAPDPFGREAKHFTETRTLNRDVRIVLEGADKFSNLIGSLYYPDGDSAKDLALELIQNGFAKYVEWSANMMEDDAKRRLKSAELQAKKDRLRIWTNYVPPQTNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNPMAERRVNLSSIRCPKIGNPRRDEKPAPYAREAREFLRTRLVGRSVKVSMEYSRKVSTSDGPFATAVPSSDSRIMDFGSVFLLSASKVDADDSTPAPPSVSSQAEGINVAELVVSRGFGTVIRHRDFEERSNYYDVLLAAESRAISGKKGINSAKDPPVMHITDLTTASAKKAKDFLPFLQRSRRLPAVVEYVFSGHRFKLMIPKETCSIAFSLSGVRCPGRDEPFSNEAIALMRRKILQRDVEIEVETVDRTGTFLGSLWESRTNMGAVLLESGLAKLQTSFGADRIQDAQTLSQAEESAKLQKLKIWENYAEGQESANGLSAESKEKEVLKVVVTEVLGAGQFYVQTIGDQRVATIQSQLSTLNLGDAPLIGSFNPKKGDIVLAQFSLDKSWNRALIVNVPRGPVESPNDIFEVFYIDYGNQETVPYARLRHLDPSVSSAPALAQLCKLAYIKVPELDDDFGQEAAEYLSECTLNSTKEFRAMIEDRDTSGGKVKGQGTGTVLVVTLVEVEAEISVNAALLQEGLARLERRKKWDRKERQAAMDNLEEFQAKAKRERLKIWQYGDIQSDEEEDSALAARKSGAARR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0031047	Biological Process	gene silencing by RNA
GO:0016442	Cellular Component	RISC complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	131.610
SRP064423	SRR2545915	Juvenile tuber	133.980
SRP108465	SRR5643513	five period of Gastrodia elata	146.070
	SRR5643514	five period of Gastrodia elata	132.900
	SRR5643515	five period of Gastrodia elata	154.260
	SRR5643524	five period of Gastrodia elata	136.450
	SRR5643525	five period of Gastrodia elata	156.260
	SRR5643528	five period of Gastrodia elata	207.110
	SRR5643658	five period of Gastrodia elata	148.740
	SRR5643659	five period of Gastrodia elata	221.650
	SRR5643660	five period of Gastrodia elata	231.320
	SRR5643661	five period of Gastrodia elata	248.170
	SRR5643662	five period of Gastrodia elata	234.510
	SRR5643663	five period of Gastrodia elata	212.590
	SRR5643664	five period of Gastrodia elata	202.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	137.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	149.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	157.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	116.150
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	118.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	112.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	130.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	119.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	176.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	152.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	190.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	190.810
SRP279888	Gastro	Gastrodia elata tuber	146.86
	Juven	Juvenile tuber	192.39
	Mother_Gastro	Mother tuber of Gastrodia elata	167.28
	Mother_Juven	Mother tuber of Juvenile	210.73