Detail information of GWHGAAEX012587/evm.TU.scaffold_44.124


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|225456475|ref|XP_002284543.1|0PREDICTED: auxin response factor 2 [Vitis vinifera]
Swissprottr|Q94JM3|ARFB_ARATH0Auxin response factor 2
trEMBLtr|D7SH69|D7SH69_VITVI0Auxin response factor {ECO:0000256|RuleBase:RU004561}
TAIRAT5G620002.00E-105auxin response factor 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004523435342349036+
Transcript Sequence

Network for GWHGAAEX012587

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.20B34712.60E-15
PF06507.12Auxin_resp961781.00E-35
PF02309.15AUX_IAA5135583.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3-ARF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms44.700
SRR2545915Juvenile tuber44.600
SRP108465SRR5643513five period of Gastrodia elata44.830
SRR5643514five period of Gastrodia elata44.270
SRR5643515five period of Gastrodia elata41.620
SRR5643524five period of Gastrodia elata40.640
SRR5643525five period of Gastrodia elata34.840
SRR5643528five period of Gastrodia elata28.950
SRR5643658five period of Gastrodia elata36.130
SRR5643659five period of Gastrodia elata44.380
SRR5643660five period of Gastrodia elata54.750
SRR5643661five period of Gastrodia elata58.560
SRR5643662five period of Gastrodia elata48.100
SRR5643663five period of Gastrodia elata44.960
SRR5643664five period of Gastrodia elata48.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.340
SRR6049655Rhizomagastrodiae_C368-T10_good_138.860
SRR6049656Rhizomagastrodiae_C368-T07_good_148.620
SRR6049657Rhizomagastrodiae_C368-T07_good_153.110
SRR6049658Rhizomagastrodiae_C368-T04_good_146.500
SRR6049659Rhizomagastrodiae_C368-T04_good_147.630
SRR6049660Rhizomagastrodiae_C368-T01_good_148.980
SRR6049661Rhizomagastrodiae_C368-T04_good_148.330
SRR6049662Rhizomagastrodiae_C368-T01_good_147.190
SRR6049663Rhizomagastrodiae_C368-T01_good_145.260
SRR6049664Rhizomagastrodiae_C368-T10_good_140.650
SRR6049665Rhizomagastrodiae_C368-T10_good_140.650
SRP279888GastroGastrodia elata tuber 54.11
JuvenJuvenile tuber59.60
Mother_GastroMother tuber of Gastrodia elata 49.49
Mother_JuvenMother tuber of Juvenile 42.68