Detail information of GWHGAAEX012589/evm.TU.scaffold_44.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743880717|ref|XP_010908711.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9LW32|PP258_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g26782, mitochondrial (Precursor) |
| trEMBL | tr|F6H438|F6H438_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46981.1} |
| TAIR | AT3G26780_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 2380901 | 2421266 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012589
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 130 | 150 | 1.2 |
| PF01535.19 | PPR | 158 | 182 | 0.018 |
| PF01535.19 | PPR | 230 | 257 | 0.00023 |
| PF13041.5 | PPR_2 | 258 | 306 | 9.90E-09 |
| PF01535.19 | PPR | 334 | 356 | 0.095 |
| PF13041.5 | PPR_2 | 361 | 407 | 1.20E-07 |
| PF01535.19 | PPR | 435 | 461 | 0.015 |
| PF14432.5 | DYW_deaminase | 534 | 658 | 6.40E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.050 |
| SRR2545915 | Juvenile tuber | 7.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.930 |
| SRR5643514 | five period of Gastrodia elata | 7.710 | |
| SRR5643515 | five period of Gastrodia elata | 6.230 | |
| SRR5643524 | five period of Gastrodia elata | 6.030 | |
| SRR5643525 | five period of Gastrodia elata | 12.230 | |
| SRR5643528 | five period of Gastrodia elata | 10.930 | |
| SRR5643658 | five period of Gastrodia elata | 11.940 | |
| SRR5643659 | five period of Gastrodia elata | 11.260 | |
| SRR5643660 | five period of Gastrodia elata | 10.550 | |
| SRR5643661 | five period of Gastrodia elata | 10.210 | |
| SRR5643662 | five period of Gastrodia elata | 9.930 | |
| SRR5643663 | five period of Gastrodia elata | 10.340 | |
| SRR5643664 | five period of Gastrodia elata | 6.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.74 |
| Juven | Juvenile tuber | 9.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.91 | |
| Mother_Juven | Mother tuber of Juvenile | 9.54 |