Detail information of GWHGAAEX012591/evm.TU.scaffold_44.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|288932082|ref|YP_003436142.1| | 4.00E-40 | ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM 10642] |
| KOG | KOG1099 | 7.00E-170 | SAM-dependent methyltransferase/cell division protein FtsJ |
| nr | gi|672161916|ref|XP_008800787.1| | 0 | PREDICTED: putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|B9IQ42|B9IQ42_POPTR | 0 | Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_03162} |
| TAIR | AT5G01230 | 7.00E-170 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 2451808 | 2499584 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012591
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01728.18 | FtsJ | 21 | 209 | 6.80E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
| GO:0001510 | Biological Process | RNA methylation |
| GO:0032259 | Biological Process | methylation |
| GO:0008175 | Molecular Function | tRNA methyltransferase activity |
| GO:0008168 | Molecular Function | methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.310 |
| SRR2545915 | Juvenile tuber | 10.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.030 |
| SRR5643514 | five period of Gastrodia elata | 19.110 | |
| SRR5643515 | five period of Gastrodia elata | 14.260 | |
| SRR5643524 | five period of Gastrodia elata | 15.260 | |
| SRR5643525 | five period of Gastrodia elata | 15.570 | |
| SRR5643528 | five period of Gastrodia elata | 11.310 | |
| SRR5643658 | five period of Gastrodia elata | 11.370 | |
| SRR5643659 | five period of Gastrodia elata | 16.480 | |
| SRR5643660 | five period of Gastrodia elata | 17.330 | |
| SRR5643661 | five period of Gastrodia elata | 15.010 | |
| SRR5643662 | five period of Gastrodia elata | 13.400 | |
| SRR5643663 | five period of Gastrodia elata | 14.890 | |
| SRR5643664 | five period of Gastrodia elata | 13.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.810 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.79 |
| Juven | Juvenile tuber | 27.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.31 | |
| Mother_Juven | Mother tuber of Juvenile | 12.59 |