Detail information of GWHGAAEX012593/evm.TU.scaffold_44.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557694902|ref|YP_008797956.1| | 4.00E-24 | ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum] |
| KOG | KOG0418 | 1.00E-87 | Ubiquitin-protein ligase |
| nr | gi|242059737|ref|XP_002459014.1| | 7.10E-105 | hypothetical protein SORBIDRAFT_03g044480 [Sorghum bicolor] |
| Swissprot | tr|Q9FI61|UBC27_ARATH | 4.00E-88 | Ubiquitin-conjugating enzyme E2 27 |
| trEMBL | tr|C5XGY6|C5XGY6_SORBI | 3.00E-105 | Putative uncharacterized protein Sb03g044480 {ECO:0000313|EMBL:EES04134.1} |
| TAIR | AT5G50870 | 1.00E-87 | ubiquitin-conjugating enzyme 27 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 2588290 | 2595134 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012593
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00179.25 | UQ_con | 6 | 144 | 1.50E-41 |
| PF00627.30 | UBA | 158 | 192 | 6.30E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04649 | HIP2, UBC1 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 61.900 |
| SRR2545915 | Juvenile tuber | 50.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 75.590 |
| SRR5643514 | five period of Gastrodia elata | 93.710 | |
| SRR5643515 | five period of Gastrodia elata | 78.760 | |
| SRR5643524 | five period of Gastrodia elata | 93.330 | |
| SRR5643525 | five period of Gastrodia elata | 81.330 | |
| SRR5643528 | five period of Gastrodia elata | 146.630 | |
| SRR5643658 | five period of Gastrodia elata | 78.540 | |
| SRR5643659 | five period of Gastrodia elata | 42.460 | |
| SRR5643660 | five period of Gastrodia elata | 41.890 | |
| SRR5643661 | five period of Gastrodia elata | 95.600 | |
| SRR5643662 | five period of Gastrodia elata | 37.030 | |
| SRR5643663 | five period of Gastrodia elata | 30.490 | |
| SRR5643664 | five period of Gastrodia elata | 32.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 85.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 59.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 60.240 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 61.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 61.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 62.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 63.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 78.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 91.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 91.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.73 |
| Juven | Juvenile tuber | 73.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 86.11 | |
| Mother_Juven | Mother tuber of Juvenile | 54.72 |