Detail information of GWHGAAEX012606/evm.TU.scaffold_44.142


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|2.00E-15ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04165.00E-102Ubiquitin-protein ligase
nrgi|672114961|ref|XP_008779270.1|1.34E-111PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Phoenix dactylifera]
Swissprottr|P42749|UBC5_ARATH1.00E-103Ubiquitin-conjugating enzyme E2 5
trEMBLtr|A0A068UUU9|A0A068UUU9_COFCA1.00E-107Coffea canephora
TAIRAT5G413405.00E-102ubiquitin conjugating enzyme 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004530460713057547-
Transcript Sequence

Network for GWHGAAEX012606

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con121424.10E-39
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10576UBE2H, UBC8 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.730
SRR2545915Juvenile tuber11.060
SRP108465SRR5643513five period of Gastrodia elata30.670
SRR5643514five period of Gastrodia elata24.860
SRR5643515five period of Gastrodia elata26.560
SRR5643524five period of Gastrodia elata28.330
SRR5643525five period of Gastrodia elata16.160
SRR5643528five period of Gastrodia elata18.680
SRR5643658five period of Gastrodia elata12.280
SRR5643659five period of Gastrodia elata14.710
SRR5643660five period of Gastrodia elata12.880
SRR5643661five period of Gastrodia elata14.010
SRR5643662five period of Gastrodia elata12.660
SRR5643663five period of Gastrodia elata13.270
SRR5643664five period of Gastrodia elata9.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.330
SRR6049655Rhizomagastrodiae_C368-T10_good_118.170
SRR6049656Rhizomagastrodiae_C368-T07_good_116.890
SRR6049657Rhizomagastrodiae_C368-T07_good_112.170
SRR6049658Rhizomagastrodiae_C368-T04_good_113.370
SRR6049659Rhizomagastrodiae_C368-T04_good_111.660
SRR6049660Rhizomagastrodiae_C368-T01_good_116.360
SRR6049661Rhizomagastrodiae_C368-T04_good_116.560
SRR6049662Rhizomagastrodiae_C368-T01_good_119.610
SRR6049663Rhizomagastrodiae_C368-T01_good_114.290
SRR6049664Rhizomagastrodiae_C368-T10_good_128.090
SRR6049665Rhizomagastrodiae_C368-T10_good_128.090
SRP279888GastroGastrodia elata tuber 12.68
JuvenJuvenile tuber20.36
Mother_GastroMother tuber of Gastrodia elata 20.48
Mother_JuvenMother tuber of Juvenile 22.18