Detail information of GWHGAAEX012612/evm.TU.scaffold_44.149
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256425718|ref|YP_003126371.1| | 2.00E-122 | allantoinase [Chitinophaga pinensis DSM 2588] |
| KOG | KOG2584 | 6.00E-101 | Dihydroorotase and related enzymes |
| nr | gi|672180535|ref|XP_008810464.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103721871 [Phoenix dactylifera] |
| Swissprot | tr|Q94AP0|ALN_ARATH | 0 | Allantoinase |
| trEMBL | tr|M5WMV8|M5WMV8_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ15029.1} |
| TAIR | YIR027C | 6.00E-101 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 3178460 | 3246127 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012612
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01979.19 | Amidohydro_1 | 94 | 487 | 7.10E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01466 | allB | Metabolic pathways | map01100 |
| Microbial metabolism in diverse environments | map01120 | ||
| Purine metabolism | map00230 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000256 | Biological Process | allantoin catabolic process |
| GO:0050897 | Molecular Function | cobalt ion binding |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
| GO:0004038 | Molecular Function | allantoinase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.930 |
| SRR2545915 | Juvenile tuber | 37.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 74.810 |
| SRR5643514 | five period of Gastrodia elata | 142.670 | |
| SRR5643515 | five period of Gastrodia elata | 89.170 | |
| SRR5643524 | five period of Gastrodia elata | 114.360 | |
| SRR5643525 | five period of Gastrodia elata | 151.090 | |
| SRR5643528 | five period of Gastrodia elata | 68.500 | |
| SRR5643658 | five period of Gastrodia elata | 162.340 | |
| SRR5643659 | five period of Gastrodia elata | 49.160 | |
| SRR5643660 | five period of Gastrodia elata | 53.200 | |
| SRR5643661 | five period of Gastrodia elata | 45.210 | |
| SRR5643662 | five period of Gastrodia elata | 79.700 | |
| SRR5643663 | five period of Gastrodia elata | 55.830 | |
| SRR5643664 | five period of Gastrodia elata | 54.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 54.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 54.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 79.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 63.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 42.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 42.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 106.27 |
| Juven | Juvenile tuber | 59.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 59.83 | |
| Mother_Juven | Mother tuber of Juvenile | 35.35 |