Gene detail

Detail information of GWHGAAEX012613/evm.TU.scaffold_44.150

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|14521593\|ref\|NP_127069.1\|	5.00E-42	GTP-binding protein [Pyrococcus abyssi GE5]
KOG	KOG2423	0	Nucleolar GTPase
nr	gi\|225461399\|ref\|XP_002284849.1\|	0	PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
Swissprot	tr\|Q9M8Z5\|NSN1_ARATH	4.00E-63	Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBL	tr\|F6H262\|F6H262_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46358.1}
TAIR	AT1G52980	0	GTP-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	3247689	3262426	-

Transcript Sequence
>GWHTAAEX012613 ATGGCGAAGAAGAGGGAGAGGGCGGTTAATGTCTCGGGTAAGCCGAAGCATTCGCTTGACGTTAACCGCAGCAATGGCGGAGTTGATAAAGGAACCAGGTCCGCCGCCACGGTCCGACGGCTTAAGATGTACAATATCAGGCCAAAGCGGGATCGGAAGGGGAAGATCCTCAAGCACGAGTTACAATCTAAGGAGCTTCCAAACTCACGCATTGAACCTGACCGCCGCTGGTTTGGTAACACTCGAGTTGTAAATCAGAAGGAGCTTGAATTCTTCCGTGAGGAGCTTCAAAATCGGTTATCAAGCAACTATAATGTCATTTTGAAAGAGAAGAAGCTGCCACTTTCTCTTCTTAATGATCATCAGAAGCAAGCAAAAGCTCATCTTCTGAATGCAGAACCTTTTGAGGATGCTTTTGGACCAAAGAGGAAGCGAAAGCGCCCAAGGCTTTTAGCAACTGACTATGAATCATTGATTAAGAAGGCTGATGGGTCTCATGATGCCTTTGAGAAAAAAATTGCTGCCAGATCATCTGGAGAAGAGATTGAAGAGGATGGCTTTAGAGACCTAGTGAGGCATTCAATGTTTGAGAAGGGTCAGAGCAAGCGCATTTGGGGTGAACTCTACAAAGTTGTTGATTCTTCTGATGTTGTTGTTCAGGTCTTGGACGCACGGGATCCCCATGGCACAAGATGTCGTCATTTGGAGAAGCATCTGAAGGAGAATTGCAAGCATAAACACATGGTTCTCTTGCTCAACAAGTGCGACTTGATTCCTGCATGGGCTACTAAAGGTTGGCTGCAGGCTTTGTCCAAGGAGTATCCTACGTTGGCATTCCATGCAAGCATTAACAAATCTTTTGGAAAGGGATCTCTTCTTTCAGTGCTGCGACAGTATGCCCGTTTGAAGAGTGATAAACAGGCTATTTCTGTTGGATTTATTGGCTATCCTAATGTTGGCAAGTCATCTGTTATCAACACATTACGTACAAAAAAGGTTTGCAAAGTGGCTCCTATTCCAGGTGAAACAAAAGTGTGGCAGTACATTACACTCACCAAGAAGATTTTTTTGATCGATTGTCCTGGTGTTGTTTATCATAACAATGACTCTGAAACTGATATCGTTCTTAAGGGTGTGGTTCGTGTTGAAAACTTGGAAGATGCTTCAGAGCATATTGGAGAAGTTCTCAGGCGAGTTAAGAAGGAGCATCTCCAACGAGCGTATAAGATCGAAAACTGGGCTGACGAAGAAGACTTTTTGGTTAGGTTGTGCAAGTCAACCGGAAAGCTTTTTAAGGGAGGCGAAGCTGATCTGAACACTGTTGCTAAGATGGTCCTCCATGACTGGCAGAGAGGGAAGATACCCTTCTTTGTGCCGCCCCCACAAAAGGGCGAAGAAGAGACTGCCGGCGACCCGACTGCAAACAATGAGCCCACGATAAGCACAGATCGAGCTGCCGCGACCATGAGAGCCATTGCTGGGATTATCGCTTCCCAGCAGCAGATGCACGTTCCCGGCCACAAAGATTTTGCCGACGACGGTGCGGATAAAGGCCCCGAGCCCGAAGTTGCAGCGAAACCGGAGCCGTCCAGCCTTGCTTCTAATGGCAGTGACTCTTAG

Network for GWHGAAEX012613

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08153.11	NGP1NT	43	168	5.60E-47
PF01926.22	MMR_HSR1	311	413	7.30E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14537	NUG2, GNL2	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.190
SRP064423	SRR2545915	Juvenile tuber	32.700
SRP108465	SRR5643513	five period of Gastrodia elata	35.070
	SRR5643514	five period of Gastrodia elata	30.790
	SRR5643515	five period of Gastrodia elata	34.700
	SRR5643524	five period of Gastrodia elata	33.120
	SRR5643525	five period of Gastrodia elata	22.580
	SRR5643528	five period of Gastrodia elata	17.690
	SRR5643658	five period of Gastrodia elata	21.390
	SRR5643659	five period of Gastrodia elata	49.310
	SRR5643660	five period of Gastrodia elata	51.570
	SRR5643661	five period of Gastrodia elata	45.170
	SRR5643662	five period of Gastrodia elata	41.220
	SRR5643663	five period of Gastrodia elata	38.320
	SRR5643664	five period of Gastrodia elata	39.680
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.500
SRP279888	Gastro	Gastrodia elata tuber	35.34
	Juven	Juvenile tuber	34.61
	Mother_Gastro	Mother tuber of Gastrodia elata	33.48
	Mother_Juven	Mother tuber of Juvenile	32.47